View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8921_low_53 (Length: 442)

Name: NF8921_low_53
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8921_low_53
NF8921_low_53
[»] chr3 (15 HSPs)
chr3 (88-428)||(53425231-53425574)
chr3 (211-428)||(53309221-53309438)
chr3 (18-99)||(53423614-53423695)
chr3 (274-428)||(48372155-48372312)
chr3 (230-360)||(53432440-53432570)
chr3 (230-426)||(26097750-26097946)
chr3 (18-88)||(53308364-53308434)
chr3 (23-75)||(48374435-48374487)
chr3 (276-363)||(53321068-53321155)
chr3 (148-180)||(26098002-26098034)
chr3 (29-88)||(53431280-53431339)
chr3 (30-75)||(26095761-26095806)
chr3 (151-180)||(48372032-48372061)
chr3 (148-193)||(53309456-53309501)
chr3 (148-180)||(53432620-53432652)
[»] chr1 (1 HSPs)
chr1 (388-429)||(140301-140342)


Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 88 - 428
Target Start/End: Complemental strand, 53425574 - 53425231
Alignment:
Q  88 tttctatgtttacgcttatgaggtccattagaataaaagctgccatgaatttgtttttctatttttaggaagataataggagcaaggtattacgctgatc 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53425574 tttctatgtttacgcttatgaggtccattagaataaaagctgccatgaatttgtttttctatttttaggaagataataggagcaaggtattacgctgatc 53425475  T
Q  188 ctgatgagtacgatga---aacggagaacacggtaagggatagaaatggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgc 284  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53425474 ctgatgagtacgatgatgaaacggagaacacggtaagggatagaaatggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgc 53425375  T
Q  285 atcatattatgatctcgcggcagggacagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgtgctctcctggctgttctggctctggc 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53425374 atcatattatgatctcgcggcagggacagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgtgctctcctggctgttctggctctggc 53425275  T
Q  385 atgcttgctgcattcgacgatgccatttatgatggagttgatgt 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  53425274 atgcttgctgcattcgacgatgccatttatgatggagttgatgt 53425231  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 211 - 428
Target Start/End: Complemental strand, 53309438 - 53309221
Alignment:
Q  211 aacacggtaagggatagaaatggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcgcggcaggga 310  Q
    |||||||||||||||| | |||||||||| ||||| ||||| || || || ||||||||  | ||||||||||||||||| |||| ||| || | |||||    
T  53309438 aacacggtaagggatacatatggacatggtacccatacagcatcgacagcagcagggaatgtcgtgagtggtgcatcatactatggtcttgcagaaggga 53309339  T
Q  311 cagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgtgctctcctggctgttctggctctggcatgcttgctgcattcgacgatgccat 410  Q
    ||||||||||||||||  |||| |||||||| || |||||||||||||| | ||||  ||||| ||||||||| || ||||| || |||||| |||||||    
T  53309338 cagcaaaaggtgggtcctctgagtcgaggttagcgatttacaaagtgtgatttccttcctgttatggctctgggatccttgcagcgttcgacaatgccat 53309239  T
Q  411 ttatgatggagttgatgt 428  Q
    ||  |||||||| |||||    
T  53309238 tttcgatggagtagatgt 53309221  T

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Target: chr3; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 53423614 - 53423695
Alignment:
Q  18 attagcaatcgatgctgcaagaatggcaacacctggtgctgcaatatcgggctacaaaagaaagaagtgttttctatgttta 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  53423614 attagcaatcgatgctgcaagaatggcaacacctggtgctgcaatatcgggctacaaaagaaagaattgtttgctatgttta 53423695  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 274 - 428
Target Start/End: Original strand, 48372155 - 48372312
Alignment:
Q  274 gtgagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgt---gctctcctggct 370  Q
    ||||||||||||||||| |||| |||||||| ||||| |||||||||||| || ||||||||||||||||| |||||||||||||   ||  |  ||| |    
T  48372155 gtgagtggtgcatcatactatggtctcgcggaagggatagcaaaaggtggttcccctgaatcgaggttggcgatttacaaagtgtgcagcaatattggtt 48372254  T
Q  371 gttctggctctggcatgcttgctgcattcgacgatgccatttatgatggagttgatgt 428  Q
    | |||||||||| ||| ||||| || || |||||||| |||| |||||||||||||||    
T  48372255 gctctggctctgccatacttgcggcgtttgacgatgcaatttctgatggagttgatgt 48372312  T

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Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 230 - 360
Target Start/End: Complemental strand, 53432570 - 53432440
Alignment:
Q  230 atggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcc 329  Q
    |||| ||||| ||||||||||| || || || || |||||  ||||||||||||||||||| | || ||| |||||||||||  ||||||| ||||| ||    
T  53432570 atggtcatggaacccacacagcatcgaccgcggctgggaatgttgtgagtggtgcatcatactttggtcttgcggcagggacgacaaaaggcgggtcccc 53432471  T
Q  330 tgaatcgaggttggcaatttacaaagtgtgc 360  Q
    |||||||||||||||||||||||||||||||    
T  53432470 tgaatcgaggttggcaatttacaaagtgtgc 53432440  T

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Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 230 - 426
Target Start/End: Complemental strand, 26097946 - 26097750
Alignment:
Q  230 atggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcc 329  Q
    |||| ||||| ||||||||||| ||||| || || |||||| | ||||||||||||||||| | || ||| || ||||| || ||||||||||| || ||    
T  26097946 atgggcatggaacccacacagcgtcaaccgcggcggggaacgtcgtgagtggtgcatcatactttggtcttgcagcaggaacggcaaaaggtggatcccc 26097847  T
Q  330 tgaatcgaggttggcaatttacaaagtgtgctctcctggctgttctggctctggcatgcttgctgcattcgacgatgccatttatgatggagttgat 426  Q
     | ||| |||||| |||||||||||||||||     ||| || |||||||||| ||| ||||| || ||||||||||| |||| ||| |||||||||    
T  26097846 cggatcaaggttgtcaatttacaaagtgtgcaactttggttgctctggctctgccatccttgcggctttcgacgatgcaatttctgacggagttgat 26097750  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 53308364 - 53308434
Alignment:
Q  18 attagcaatcgatgctgcaagaatggcaacacctggtgctgcaatatcgggctacaaaagaaagaagtgtt 88  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  53308364 attaccaatccatgatgcaagaatggcaacacctggtgctgcaatatcaggctacaaaagaaagaattgtt 53308434  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 48374487 - 48374435
Alignment:
Q  23 caatcgatgctgcaagaatggcaacacctggtgctgcaatatcgggctacaaa 75  Q
    ||||| ||||||||||||||| ||||||||||||||||||||| |||||||||    
T  48374487 caatccatgctgcaagaatggtaacacctggtgctgcaatatcaggctacaaa 48374435  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 363
Target Start/End: Complemental strand, 53321155 - 53321068
Alignment:
Q  276 gagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgtgctct 363  Q
    ||||||||||||||| || | ||| ||   ||||||| ||||||| ||||||||| |||| |||||||| ||||||||||||||||||    
T  53321155 gagtggtgcatcatactacggtcttgcaaaagggacatcaaaaggggggtctcctcaatcaaggttggcgatttacaaagtgtgctct 53321068  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 26098034 - 26098002
Alignment:
Q  148 atttttaggaagataataggagcaaggtattac 180  Q
    |||||||||||||||||||||||||||||||||    
T  26098034 atttttaggaagataataggagcaaggtattac 26098002  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 53431280 - 53431339
Alignment:
Q  29 atgctgcaagaatggcaacacctggtgctgcaatatcgggctacaaaagaaagaagtgtt 88  Q
    ||||||||||||||  ||||||||||||||| |||||||||||  ||| |||||| ||||    
T  53431280 atgctgcaagaatgttaacacctggtgctgcgatatcgggctaacaaaaaaagaattgtt 53431339  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 26095761 - 26095806
Alignment:
Q  30 tgctgcaagaatggcaacacctggtgctgcaatatcgggctacaaa 75  Q
    |||||||| ||||  ||||||||||||||||||||| |||||||||    
T  26095761 tgctgcaacaatgttaacacctggtgctgcaatatcaggctacaaa 26095806  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 180
Target Start/End: Original strand, 48372032 - 48372061
Alignment:
Q  151 tttaggaagataataggagcaaggtattac 180  Q
    ||||||||||||||||||||||||||||||    
T  48372032 tttaggaagataataggagcaaggtattac 48372061  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 53309501 - 53309456
Alignment:
Q  148 atttttaggaagataataggagcaaggtattacgctgatcctgatg 193  Q
    ||||||||||||||||| ||||||||||||||| || | |||||||    
T  53309501 atttttaggaagataatcggagcaaggtattaccctaaccctgatg 53309456  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 53432652 - 53432620
Alignment:
Q  148 atttttaggaagataataggagcaaggtattac 180  Q
    |||||||||||||||||||||||||| ||||||    
T  53432652 atttttaggaagataataggagcaagatattac 53432620  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 429
Target Start/End: Complemental strand, 140342 - 140301
Alignment:
Q  388 cttgctgcattcgacgatgccatttatgatggagttgatgtc 429  Q
    ||||||||||| || ||||||||| |||||||||||||||||    
T  140342 cttgctgcatttgatgatgccattgatgatggagttgatgtc 140301  T

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