View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_55 (Length: 441)
Name: NF8921_low_55
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 40094182 - 40094611
Alignment:
| Q |
1 |
gcaaaagaaaacgcatccactttggtgtcatattcctcatttctgtagacctccggtgcaacataccgccctgttatgcatttgaatttgaattaattca |
100 |
Q |
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| T |
40094182 |
gcaaaagaaaacgcatccactttggtgtcatattcctcatttctgtagacctctggtgcaacataccgccctgttatgcatttgaatttgaattaattca |
40094281 |
T |
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| Q |
101 |
tctataagagctacacaaaacagaaccaagtacaaacaacaaaatcgaaatgaagccaactatatgtataagagataacagtatttcgagttgatcacat |
200 |
Q |
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| T |
40094282 |
tctataagagctacacaaaacagaaccaagtacaaacaacaaaatcgaaatgaagccaactatatgtataagagataacagtatttcgagttgatcacat |
40094381 |
T |
|
| Q |
201 |
tagaaaacttgaaaccacccgacaaattgtcttcggtagtcactgggtaaaaacatttcttttcttctatcttttgtagaatatgcaataatttcgcaga |
300 |
Q |
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| T |
40094382 |
tagaaaacttgaagccacccgacaaattgtcttcggtagtcactgggtaaaaacatttcttttcttctatcttttgtagaatatgcaataatttcgcaga |
40094481 |
T |
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| Q |
301 |
tcacatttctcgagtaataatgtttgcaatattg-ttttttgtaacgtgaccaactatgaatgtttgttaccagactccgcaaagaaagaaaagaaaaca |
399 |
Q |
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| T |
40094482 |
tcacatttctcgaataataatgtttgcaatattgtttttttgtaacatgaccaactatgaatgtttgttaccagactccgcaaagaaagaaaagaaaaca |
40094581 |
T |
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| Q |
400 |
tacatgatgtatcctggcatgtcacaggtt |
429 |
Q |
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| T |
40094582 |
tacatgatgtatcctggcatgtcacaggtt |
40094611 |
T |
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