View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_56 (Length: 424)
Name: NF8921_low_56
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_56 |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 28 - 360
Target Start/End: Complemental strand, 32526134 - 32525803
Alignment:
| Q |
28 |
tattgtgatattttgttgacataatgttgtgaattaatgtgacaattgattagattatccttattgattgttatttgattttatgtggtattattagatg |
127 |
Q |
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| T |
32526134 |
tattgtgatattttgttgacataatgttgtgaattaatgtgacaattgattggattatccttattgattgttatttgattttatgtggtattgttagatg |
32526035 |
T |
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| Q |
128 |
ttttacgtaatatctcatttattttatactaatacatgtttatgaaattctccc-ctttgttgtgtttatgattgtttggctcgcccatatgtttgtgaa |
226 |
Q |
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| T |
32526034 |
ttttacgtaatatctcatttattttatactaatacatgtttatgaaattctccctctttgttgtgtttatgattgtttggctcgcccatatgtttgtgaa |
32525935 |
T |
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| Q |
227 |
attgcagtagatacatgttctttagtcttggagtttaagtttagtgacaatttgggagaatgagttatagagtcatgtactccgtaaccttattttataa |
326 |
Q |
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| T |
32525934 |
attgcagtagatacatgttctttagtcttggagtttaagtttagtgataatttgg--gaatgagttatagagtcatgtactccgtaaccttattttataa |
32525837 |
T |
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| Q |
327 |
catctatgatatatttttgaaaaacaaagttgtc |
360 |
Q |
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| T |
32525836 |
catctatgatatatttttgaaaaacaaagttgtc |
32525803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 32521183 - 32521057
Alignment:
| Q |
24 |
ataatattgtgatattttgttgacataatgttgtgaattaatgtgacaattgattagattatccttattgattgttatttgattttatgtggtattatta |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||| |||||||||||||||||||| ||| |
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| T |
32521183 |
ataatattgtgatattttgttgacataatgttgtgaattaacgtgacaattgattggattatccttatcgattgtgatttgattttatgtggtattgtta |
32521084 |
T |
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| Q |
124 |
gatg-ttttacgtaatatctcatttat |
149 |
Q |
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| T |
32521083 |
gaggtttttacgtattatcttatttat |
32521057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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