View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_58 (Length: 415)
Name: NF8921_low_58
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 335010 - 334613
Alignment:
| Q |
1 |
ttagttccttcagggcgtctggttgtcaggtggattctttctccaatgttgtaaccaataacaatttataaagataaaattccaagtaatcagtagtttt |
100 |
Q |
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| T |
335010 |
ttagttccttcagggcgtctggttgtcaggtggattctttctccaatgttgtaaccaataacaatttataaagataaaattccaagcaatcagtagtttt |
334911 |
T |
|
| Q |
101 |
acccaaaatggaacctttttaagacattgaccctcttctgtattcctctgaaggaatggggcttgtccatctatgtacattgatttgtttggtgaacttc |
200 |
Q |
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| T |
334910 |
acccaaaatggaacctttttaacacattgaccctcttctgtattcctctgaaggaatggggcttgtccatctatgtacattgatttgtttggtgaacttc |
334811 |
T |
|
| Q |
201 |
acaattatcacatagcagtcattattacactatcatttaaaggattgatttcagtttaatactccttgtgtattattcctaaagnnnnnnnnnnnnnnnn |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
334810 |
acaattatcacatagcagtcattattacactatcatttaaaggattgatttcagtttaatactccttgtgtattattcctaa--tttttttttttttttt |
334713 |
T |
|
| Q |
301 |
naaccatgtcctctcttttcttttcaaaattagaggtctgttttgaagttctatattgtatcatgcaaagtttatttgaactatccgtaaaatctgatgt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
334712 |
taaccatgtcctctcttttcttttcaaaattagaggtctgttttgaagttctatattgtatcatgcaaagtttatttgaactatccgtaaaatctgatgt |
334613 |
T |
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