View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_59 (Length: 411)
Name: NF8921_low_59
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_59 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 38869613 - 38869215
Alignment:
| Q |
1 |
gaagattatggaagacgtccaaaacttcagtattttctctctcnnnnnnnnnncttt-------ctaaaattattttccattgaatgttgtctatcttct |
93 |
Q |
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| T |
38869613 |
gaagattatggaagacgtccaaaacttcagtattttctctctctttttttttttttttttttttctaaaattattttccattgaatgttgtctatcttct |
38869514 |
T |
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| Q |
94 |
cattgaatctgttttctgtttttgatgcacttcaaatatatgatcaatgacgtttctgcattgtgattttaaatgataagaacgaatttgaatgctaagt |
193 |
Q |
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| T |
38869513 |
cgttgaatctgttttctgtttttgatgcacttcaaatatatgatcaatg-cgtttctgcattatgattttaaatgataagaacgaatttgaatgctaagt |
38869415 |
T |
|
| Q |
194 |
acaaaatatttgttcattcattattttaaatttggggtgttggagttaaataatttatggtaagcatattcacctgatttgttaccttcttttttataat |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38869414 |
acaaaatatttgttcattcattattttaaatttggggtgttggagttaaataatttatggtaagcatattcacctgatttgttaccttcttttttataat |
38869315 |
T |
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| Q |
294 |
ggctactcattgcaatatatcttaggcaactcgcatatgacatggaaagagcgcaaaaaggttgaagataggaaggttgtttcccttggtgggaaggtga |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38869314 |
ggctactcattgcaatatatcttaggcaactcgcatatgacatggaaagagcgcaaaaaggttgaagataggaaggttgtttcccttggtgggaaggtga |
38869215 |
T |
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