View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8921_low_6 (Length: 901)

Name: NF8921_low_6
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8921_low_6
NF8921_low_6
[»] chr7 (16 HSPs)
chr7 (292-649)||(24044772-24045130)
chr7 (18-274)||(24045660-24045917)
chr7 (752-882)||(24044598-24044726)
chr7 (289-350)||(9107345-9107406)
chr7 (655-708)||(28110019-28110072)
chr7 (613-657)||(19426579-19426623)
chr7 (388-424)||(24044726-24044762)
chr7 (617-657)||(33223557-33223597)
chr7 (614-650)||(41080126-41080162)
chr7 (291-329)||(36449298-36449336)
chr7 (613-650)||(4971289-4971326)
chr7 (613-650)||(12141898-12141935)
chr7 (613-650)||(24700120-24700157)
chr7 (613-650)||(27164872-27164909)
chr7 (613-650)||(37856189-37856226)
chr7 (613-650)||(41985124-41985161)
[»] scaffold1613 (1 HSPs)
scaffold1613 (294-350)||(857-913)
[»] chr1 (13 HSPs)
chr1 (294-350)||(38544578-38544634)
chr1 (291-350)||(38548896-38548955)
chr1 (613-650)||(50797790-50797827)
chr1 (614-650)||(16836139-16836175)
chr1 (613-652)||(40612113-40612152)
chr1 (615-650)||(52714979-52715014)
chr1 (613-647)||(44517988-44518022)
chr1 (613-650)||(1690445-1690482)
chr1 (613-650)||(9011644-9011681)
chr1 (613-650)||(19442505-19442542)
chr1 (613-650)||(27687543-27687580)
chr1 (613-650)||(40596078-40596115)
chr1 (613-650)||(42256459-42256496)
[»] chr4 (22 HSPs)
chr4 (291-350)||(12296360-12296419)
chr4 (613-657)||(9162065-9162109)
chr4 (655-708)||(52456883-52456936)
chr4 (614-657)||(169530-169573)
chr4 (614-657)||(15596396-15596439)
chr4 (614-653)||(30042134-30042173)
chr4 (614-657)||(39010165-39010208)
chr4 (613-655)||(51717312-51717354)
chr4 (613-650)||(3222988-3223025)
chr4 (655-708)||(9827939-9827992)
chr4 (613-650)||(15638160-15638197)
chr4 (613-650)||(23094375-23094412)
chr4 (655-708)||(26440727-26440780)
chr4 (613-650)||(31221412-31221449)
chr4 (613-650)||(38864771-38864808)
chr4 (613-650)||(41262653-41262690)
chr4 (613-650)||(44368237-44368274)
chr4 (655-708)||(45274327-45274380)
chr4 (613-642)||(48783809-48783838)
chr4 (613-650)||(51359825-51359862)
chr4 (613-650)||(54036553-54036590)
chr4 (655-708)||(54801060-54801113)
[»] chr6 (8 HSPs)
chr6 (613-657)||(15722531-15722575)
chr6 (613-657)||(30714679-30714723)
chr6 (293-327)||(34101392-34101426)
chr6 (613-650)||(3180027-3180064)
chr6 (613-650)||(3339534-3339571)
chr6 (655-708)||(9188900-9188953)
chr6 (655-708)||(12044394-12044447)
chr6 (613-650)||(30945822-30945859)
[»] chr8 (12 HSPs)
chr8 (614-657)||(7596919-7596962)
chr8 (614-657)||(21273738-21273781)
chr8 (613-650)||(36064029-36064066)
chr8 (613-657)||(11223887-11223931)
chr8 (613-657)||(22852867-22852911)
chr8 (615-650)||(6806909-6806944)
chr8 (622-653)||(24319348-24319379)
chr8 (617-650)||(14710917-14710950)
chr8 (613-650)||(17775464-17775501)
chr8 (613-650)||(40413373-40413410)
chr8 (613-650)||(42443103-42443140)
chr8 (681-758)||(43873592-43873672)
[»] chr5 (10 HSPs)
chr5 (291-329)||(17853891-17853929)
chr5 (613-657)||(26660439-26660483)
chr5 (613-657)||(26932031-26932075)
chr5 (614-650)||(27440479-27440515)
chr5 (613-657)||(36713206-36713250)
chr5 (614-657)||(19127124-19127167)
chr5 (608-657)||(3771034-3771083)
chr5 (613-650)||(3960204-3960241)
chr5 (613-650)||(14914371-14914408)
chr5 (614-655)||(42699057-42699098)
[»] chr2 (7 HSPs)
chr2 (291-329)||(27879973-27880011)
chr2 (613-650)||(22353199-22353236)
chr2 (291-350)||(20572273-20572331)
chr2 (655-708)||(17999808-17999861)
chr2 (613-650)||(27307266-27307303)
chr2 (613-650)||(29795446-29795483)
chr2 (613-650)||(36909878-36909915)
[»] scaffold0592 (1 HSPs)
scaffold0592 (613-653)||(8339-8379)
[»] chr3 (15 HSPs)
chr3 (613-657)||(48945846-48945890)
chr3 (613-657)||(55344324-55344368)
chr3 (613-652)||(3958051-3958090)
chr3 (614-657)||(20380917-20380960)
chr3 (615-657)||(31206879-31206921)
chr3 (613-650)||(7249-7286)
chr3 (613-650)||(1765403-1765440)
chr3 (613-650)||(8254026-8254063)
chr3 (613-650)||(34021498-34021535)
chr3 (613-650)||(35074125-35074162)
chr3 (613-650)||(43169777-43169814)
chr3 (613-650)||(47683800-47683837)
chr3 (613-650)||(48405409-48405446)
chr3 (613-650)||(49196695-49196732)
chr3 (613-650)||(52454129-52454166)


Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-126; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 292 - 649
Target Start/End: Complemental strand, 24045130 - 24044772
Alignment:
Q  292 gaaaaacgatatccataaccactcatcaccactactcatctcaacgtaacacccctctatattagtccctcaactatataccagagactaaattaatctt 391  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24045130 gaaaaacgatatccataaccactcatcatcactacgcatctcaacgtaacacccctctatattagtccctcaactatataccagagactaaattagtctt 24045031  T
Q  392 ccaaataaaaatgttaaggactgatttgagtattg-nnnnnnngttaaagactacattaaattttgagacaaaattgtgtctctactcttattattttga 490  Q
    |||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24045030 ccaaataaaaatgttaaggactgatttgagtattgttttttttgttaaagactacattaaattttgagacaaaattgtgtctctactcttattattttga 24044931  T
Q  491 gtataaaattaaagatga--ctctaatnnnnnnnngatattgtttaaaacataaatatgcttttaaacacccaaaagtttataaatttatccctttgnnn 588  Q
    ||||| ||||||||||||  |||||||        |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       
T  24044930 gtatacaattaaagatgactctctaat-aaaaaaagatattgtttaaaacataaatatgcttttaaacaccgaaaagtttataaatttatccctttg-tt 24044833  T
Q  589 nnnnagagaaacttagctgagttcagagaaatcatatttgtacaatcattttgtgacaact 649  Q
        ||||||||||||||||||| | |||||| ||||||||||||| ||||||||||||||    
T  24044832 ttttagagaaacttagctgagtttatagaaatgatatttgtacaattattttgtgacaact 24044772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 24045917 - 24045660
Alignment:
Q  18 tttctaggggtgaatgagttgcatggatggattgtgttgtaaggtactgaaggaaaagagattgtaaggttcgtaatggtttgtgatactattggtccca 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24045917 tttctagtggtgaatgagttgcatggatggattgtgttgtaaggtactgaaggaaaagagattgtaaggttcgtaatggtttgtgatactattggtccca 24045818  T
Q  118 cttatcttcttcatatcattttgc-tttgtgattgtggattccaatggttctgttttgccacggtggannnnnnnnnnnnnnnnncttgaatgaaaaggt 216  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||    
T  24045817 cttatcttcttcatatcattttgcttttgtgattgtggattccaatggttctgttttgccacggtggattttttgtctgttttttcttgaatgaaaaggt 24045718  T
Q  217 agtcttaacaattttaaaactaatttatgcctttttaagtattattgcgtaggtcctt 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24045717 agtcttaacaattttaaaactaatttatgcctttttaagtattattgtgtaggtcctt 24045660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 752 - 882
Target Start/End: Complemental strand, 24044726 - 24044598
Alignment:
Q  752 actactcctgagtttaactctttagaatctagtatagaatgattcttcgacacagcttttgttatctccttcgtcaatgcttgtaatattctgaagttgt 851  Q
    |||||||| ||||||||| |||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24044726 actactccagagtttaaccctttagaatct--tatagaatgattcttcgacacagcttttgtcatctccttcgtcaatgcttgtaatattctgaagttgt 24044629  T
Q  852 tcacactaaatggtcatcaaaggaatattga 882  Q
    ||||| |||||||||||||||||||| ||||    
T  24044628 tcacagtaaatggtcatcaaaggaatgttga 24044598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 289 - 350
Target Start/End: Complemental strand, 9107406 - 9107345
Alignment:
Q  289 attgaaaaacgatatccataaccactcatcaccactactcatctcaacgtaacacccctcta 350  Q
    |||| |||||||||||||||||||| |||| |||||||||||| |||  |||| ||||||||    
T  9107406 attggaaaacgatatccataaccacccatcgccactactcatcccaaaataactcccctcta 9107345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 655 - 708
Target Start/End: Original strand, 28110019 - 28110072
Alignment:
Q  655 acattatatttttattctatctaccattttctctcttcattatttttgaccaat 708  Q
    |||||||||||||||||| |||  |||||||||||| |||| ||||||||||||    
T  28110019 acattatatttttattctctctttcattttctctctccattgtttttgaccaat 28110072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 613 - 657
Target Start/End: Original strand, 19426579 - 19426623
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 657  Q
    |||||||| |||||||||||| |||||||||||||||| ||||||    
T  19426579 agagaaatgatatttgtacaaccattttgtgacaactttttgaca 19426623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 388 - 424
Target Start/End: Original strand, 24044726 - 24044762
Alignment:
Q  388 tcttccaaataaaaatgttaaggactgatttgagtat 424  Q
    ||||||||||||||||||||||||||||| |||||||    
T  24044726 tcttccaaataaaaatgttaaggactgatgtgagtat 24044762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 617 - 657
Target Start/End: Complemental strand, 33223597 - 33223557
Alignment:
Q  617 aaatcatatttgtacaatcattttgtgacaacttcttgaca 657  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  33223597 aaatgatatttgtacaaccattttgtgacaacttcttgaca 33223557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 614 - 650
Target Start/End: Original strand, 41080126 - 41080162
Alignment:
Q  614 gagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    ||||||| |||||||||||||||||||||||||||||    
T  41080126 gagaaatgatatttgtacaatcattttgtgacaactt 41080162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 291 - 329
Target Start/End: Complemental strand, 36449336 - 36449298
Alignment:
Q  291 tgaaaaacgatatccataaccactcatcaccactactca 329  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  36449336 tgaaaaacgatatccataaccactcatcgtcactactca 36449298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Original strand, 4971289 - 4971326
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  4971289 agagaaatgatatttgtacaaccattttgtgacaactt 4971326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Original strand, 12141898 - 12141935
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  12141898 agagaaatcatatttgtacaaccattttgtgataactt 12141935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Original strand, 24700120 - 24700157
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  24700120 agagaaatgatatttgtacaatcattttgtaacaactt 24700157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Complemental strand, 27164909 - 27164872
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  27164909 agagaaatgatatttgtacaatcaatttgtgacaactt 27164872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Complemental strand, 37856226 - 37856189
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  37856226 agagaaatgatatttgtacaaccattttgtgacaactt 37856189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Complemental strand, 41985161 - 41985124
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  41985161 agagaaatgatatttgtacaatcaatttgtgacaactt 41985124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 857 - 913
Alignment:
Q  294 aaaacgatatccataaccactcatcaccactactcatctcaacgtaacacccctcta 350  Q
    |||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||    
T  857 aaaacgatatccataaccactcatcgtcactactcatcccaacgtaacacccctcta 913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 4e-16; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 38544578 - 38544634
Alignment:
Q  294 aaaacgatatccataaccactcatcaccactactcatctcaacgtaacacccctcta 350  Q
    |||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||    
T  38544578 aaaacgatatccataaccactcatcgtcactactcatcccaacgtaacacccctcta 38544634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 291 - 350
Target Start/End: Original strand, 38548896 - 38548955
Alignment:
Q  291 tgaaaaacgatatccataaccactcatcaccactactcatctcaacgtaacacccctcta 350  Q
    ||||||||||||| ||||||||| ||||  ||||||||||| ||| ||||||||||||||    
T  38548896 tgaaaaacgatattcataaccacccatcgtcactactcatcccaaagtaacacccctcta 38548955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 613 - 650
Target Start/End: Original strand, 50797790 - 50797827
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| |||||||||||||||||||||||||||||    
T  50797790 agagaaatgatatttgtacaatcattttgtgacaactt 50797827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 614 - 650
Target Start/End: Complemental strand, 16836175 - 16836139
Alignment:
Q  614 gagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    ||||||| |||||||||||||||||||||||||||||    
T  16836175 gagaaatgatatttgtacaatcattttgtgacaactt 16836139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 613 - 652
Target Start/End: Original strand, 40612113 - 40612152
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaacttct 652  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  40612113 agagaaatgatatttgtacaaccattttgtgacaacttct 40612152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 650
Target Start/End: Original strand, 52714979 - 52715014
Alignment:
Q  615 agaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||| |||||||||||||||||||||||||||||    
T  52714979 agaaatgatatttgtacaatcattttgtgacaactt 52715014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 613 - 647
Target Start/End: Complemental strand, 44518022 - 44517988
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaa 647  Q
    |||||||||||||||||| ||||||||||||||||    
T  44518022 agagaaatcatatttgtataatcattttgtgacaa 44517988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Original strand, 1690445 - 1690482
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  1690445 agagaaataatatttgtacaaccattttgtgacaactt 1690482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Original strand, 9011644 - 9011681
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  9011644 agagaaatgatatttgtacaaccattttgtgacaactt 9011681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Original strand, 19442505 - 19442542
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  19442505 agagaaatgatatttgaacaatcattttgtgacaactt 19442542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Complemental strand, 27687580 - 27687543
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  27687580 agagaaatgatatttgtacaaccattttgtgacaactt 27687543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Complemental strand, 40596115 - 40596078
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  40596115 agagaaatgatatttgtacaaccattttgtgacaactt 40596078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Original strand, 42256459 - 42256496
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  42256459 agagaaatgatatttgtacaaccattttgtgacaactt 42256496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 12296419 - 12296360
Alignment:
Q  291 tgaaaaacgatatccataaccactcatcaccactactcatctcaacgtaacacccctcta 350  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||  |||||||||||||    
T  12296419 tgaaaaacgatatccataaccacccatcgccactactcatcccaaaataacacccctcta 12296360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 613 - 657
Target Start/End: Original strand, 9162065 - 9162109
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 657  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||    
T  9162065 agagaaatgatatttgtacaatcattttgtgacaactttttgaca 9162109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 655 - 708
Target Start/End: Complemental strand, 52456936 - 52456883
Alignment:
Q  655 acattatatttttattctatctaccattttctctcttcattatttttgaccaat 708  Q
    |||||||||||||| ||| ||| || |||||||||| |||||||||||||||||    
T  52456936 acattatatttttactctctcttcctttttctctctacattatttttgaccaat 52456883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 657
Target Start/End: Complemental strand, 169573 - 169530
Alignment:
Q  614 gagaaatcatatttgtacaatcattttgtgacaacttcttgaca 657  Q
    ||||||| |||||||||||| |||||||||||||||| ||||||    
T  169573 gagaaatgatatttgtacaaccattttgtgacaactttttgaca 169530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 657
Target Start/End: Original strand, 15596396 - 15596439
Alignment:
Q  614 gagaaatcatatttgtacaatcattttgtgacaacttcttgaca 657  Q
    ||||||| |||||||||||| || ||||||||||||||||||||    
T  15596396 gagaaatgatatttgtacaaccactttgtgacaacttcttgaca 15596439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 653
Target Start/End: Original strand, 30042134 - 30042173
Alignment:
Q  614 gagaaatcatatttgtacaatcattttgtgacaacttctt 653  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  30042134 gagaaatgatatttgtacaaccattttgtgacaacttctt 30042173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 657
Target Start/End: Complemental strand, 39010208 - 39010165
Alignment:
Q  614 gagaaatcatatttgtacaatcattttgtgacaacttcttgaca 657  Q
    ||||||| |||||||||||| |||||||||||||||| ||||||    
T  39010208 gagaaatgatatttgtacaaccattttgtgacaactttttgaca 39010165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 613 - 655
Target Start/End: Complemental strand, 51717354 - 51717312
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaacttcttga 655  Q
    |||||||| |||||||||||| || ||||||||||||||||||    
T  51717354 agagaaatgatatttgtacaaccaatttgtgacaacttcttga 51717312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Original strand, 3222988 - 3223025
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  3222988 agagaaatgatatttgtacaatcaatttgtgacaactt 3223025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 708
Target Start/End: Complemental strand, 9827992 - 9827939
Alignment:
Q  655 acattatatttttattctatctaccattttctctcttcattatttttgaccaat 708  Q
    ||||||| |||||||||| |||| | |||||||||| |||| ||||||||||||    
T  9827992 acattatgtttttattctctctatctttttctctctccattgtttttgaccaat 9827939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Original strand, 15638160 - 15638197
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  15638160 agagaaatgatatttgtacaatcattttttgacaactt 15638197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Original strand, 23094375 - 23094412
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  23094375 agagaaatgatatttgtacaatcattttgtgataactt 23094412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 708
Target Start/End: Original strand, 26440727 - 26440780
Alignment:
Q  655 acattatatttttattctatctaccattttctctcttcattatttttgaccaat 708  Q
    |||||||||||||| ||| ||| || |||||||||| |||| ||||||||||||    
T  26440727 acattatatttttactctctcttcctttttctctctccattgtttttgaccaat 26440780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Original strand, 31221412 - 31221449
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  31221412 agagaaatgatatttgtacaatcaatttgtgacaactt 31221449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Complemental strand, 38864808 - 38864771
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  38864808 agagaaatgatatttgtacaattattttgtgacaactt 38864771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Complemental strand, 41262690 - 41262653
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  41262690 agagaaatgatatttgtacaattattttgtgacaactt 41262653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Complemental strand, 44368274 - 44368237
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  44368274 agagaaatgatatttgtacaatcaatttgtgacaactt 44368237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 708
Target Start/End: Original strand, 45274327 - 45274380
Alignment:
Q  655 acattatatttttattctatctaccattttctctcttcattatttttgaccaat 708  Q
    |||||||||| ||||||| ||| || ||||||||||| |||||||| |||||||    
T  45274327 acattatattgttattctctcttcctttttctctctttattattttggaccaat 45274380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 642
Target Start/End: Original strand, 48783809 - 48783838
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgt 642  Q
    ||||||||||||||||||||||||||||||    
T  48783809 agagaaatcatatttgtacaatcattttgt 48783838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Complemental strand, 51359862 - 51359825
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  51359862 agagaaatgatatttgtacaaccattttgtgacaactt 51359825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Complemental strand, 54036590 - 54036553
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  54036590 agagaaatgatatttgtacaaccattttgtgacaactt 54036553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 708
Target Start/End: Original strand, 54801060 - 54801113
Alignment:
Q  655 acattatatttttattctatctaccattttctctcttcattatttttgaccaat 708  Q
    |||||||||| ||| ||| ||| || |||||||||| |||||||||||||||||    
T  54801060 acattatattcttactctctcttcctttttctctctccattatttttgaccaat 54801113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 613 - 657
Target Start/End: Complemental strand, 15722575 - 15722531
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 657  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||    
T  15722575 agagaaatgatatttgtacaatcattttgtgacaactttttgaca 15722531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 613 - 657
Target Start/End: Original strand, 30714679 - 30714723
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 657  Q
    |||||||| ||||||||||||||||||||||||| ||| ||||||    
T  30714679 agagaaatgatatttgtacaatcattttgtgacagctttttgaca 30714723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 293 - 327
Target Start/End: Complemental strand, 34101426 - 34101392
Alignment:
Q  293 aaaaacgatatccataaccactcatcaccactact 327  Q
    |||||||||||||||||||||||||| ||||||||    
T  34101426 aaaaacgatatccataaccactcatcgccactact 34101392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Complemental strand, 3180064 - 3180027
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  3180064 agagaaatgatatttgtacaatcattttttgacaactt 3180027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Complemental strand, 3339571 - 3339534
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  3339571 agagaaatgatatttgtacaaccattttgtgacaactt 3339534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 708
Target Start/End: Complemental strand, 9188953 - 9188900
Alignment:
Q  655 acattatatttttattctatctaccattttctctcttcattatttttgaccaat 708  Q
    |||||||||| ||| ||| ||| || |||||||||| |||||||||||||||||    
T  9188953 acattatattcttactctctcttcctttttctctctccattatttttgaccaat 9188900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 708
Target Start/End: Original strand, 12044394 - 12044447
Alignment:
Q  655 acattatatttttattctatctaccattttctctcttcattatttttgaccaat 708  Q
    |||||||||||||| ||| ||| || |||||||||| |||| ||||||||||||    
T  12044394 acattatatttttactctctcttcctttttctctctccattgtttttgaccaat 12044447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Original strand, 30945822 - 30945859
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  30945822 agagaaatgatatttatacaatcattttgtgacaactt 30945859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 614 - 657
Target Start/End: Complemental strand, 7596962 - 7596919
Alignment:
Q  614 gagaaatcatatttgtacaatcattttgtgacaacttcttgaca 657  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||    
T  7596962 gagaaatgatatttgtacaatcactttgtgacaacttcttgaca 7596919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 614 - 657
Target Start/End: Complemental strand, 21273781 - 21273738
Alignment:
Q  614 gagaaatcatatttgtacaatcattttgtgacaacttcttgaca 657  Q
    ||||||| |||||||||||| |||||||||||||||||||||||    
T  21273781 gagaaatgatatttgtacaaccattttgtgacaacttcttgaca 21273738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 613 - 650
Target Start/End: Original strand, 36064029 - 36064066
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| |||||||||||||||||||||||||||||    
T  36064029 agagaaatgatatttgtacaatcattttgtgacaactt 36064066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 613 - 657
Target Start/End: Complemental strand, 11223931 - 11223887
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 657  Q
    |||||||| |||||||||||  |||||||||||||||||||||||    
T  11223931 agagaaatgatatttgtacatccattttgtgacaacttcttgaca 11223887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 613 - 657
Target Start/End: Complemental strand, 22852911 - 22852867
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 657  Q
    |||||||| |||||||||||| || ||||||||||||||||||||    
T  22852911 agagaaatgatatttgtacaaccactttgtgacaacttcttgaca 22852867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 650
Target Start/End: Original strand, 6806909 - 6806944
Alignment:
Q  615 agaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||| |||||||||||||||||||||||||||||    
T  6806909 agaaatgatatttgtacaatcattttgtgacaactt 6806944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 622 - 653
Target Start/End: Original strand, 24319348 - 24319379
Alignment:
Q  622 atatttgtacaatcattttgtgacaacttctt 653  Q
    ||||||||||||||||||||||||||||||||    
T  24319348 atatttgtacaatcattttgtgacaacttctt 24319379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 650
Target Start/End: Complemental strand, 14710950 - 14710917
Alignment:
Q  617 aaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||| |||||||||||||||||||||||||||||    
T  14710950 aaatgatatttgtacaatcattttgtgacaactt 14710917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Complemental strand, 17775501 - 17775464
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  17775501 agagaaatgatatttgaacaatcattttgtgacaactt 17775464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Complemental strand, 40413410 - 40413373
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  40413410 agagaaatgatatttgtacaattattttgtgacaactt 40413373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Original strand, 42443103 - 42443140
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  42443103 agagaaatgatatttgtacaatcatttagtgacaactt 42443140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 758
Target Start/End: Complemental strand, 43873672 - 43873592
Alignment:
Q  681 ttttctctcttcattatttttgaccaatnnnnnnngaggaaaaagaagttgtcaa---ttattgttcaaatatcactactc 758  Q
    |||||||||| |||||||||| || |||       ||||||||||||||||||||   | |||||||||||||||||||||    
T  43873672 ttttctctctccattatttttaactaatagaaagagaggaaaaagaagttgtcaaaaatgattgttcaaatatcactactc 43873592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 291 - 329
Target Start/End: Original strand, 17853891 - 17853929
Alignment:
Q  291 tgaaaaacgatatccataaccactcatcaccactactca 329  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  17853891 tgaaaaacgatatccataaccacccatcaccactactca 17853929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 613 - 657
Target Start/End: Complemental strand, 26660483 - 26660439
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 657  Q
    |||||||| |||||||||||  |||||||||||||||||||||||    
T  26660483 agagaaatgatatttgtacatccattttgtgacaacttcttgaca 26660439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 613 - 657
Target Start/End: Complemental strand, 26932075 - 26932031
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 657  Q
    |||||||| |||||||||||  |||||||||||||||||||||||    
T  26932075 agagaaatgatatttgtacatccattttgtgacaacttcttgaca 26932031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 614 - 650
Target Start/End: Original strand, 27440479 - 27440515
Alignment:
Q  614 gagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    ||||||| |||||||||||||||||||||||||||||    
T  27440479 gagaaatgatatttgtacaatcattttgtgacaactt 27440515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 613 - 657
Target Start/End: Complemental strand, 36713250 - 36713206
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 657  Q
    |||||||| |||||||||||| || ||||||||||||||||||||    
T  36713250 agagaaatgatatttgtacaaccactttgtgacaacttcttgaca 36713206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 657
Target Start/End: Original strand, 19127124 - 19127167
Alignment:
Q  614 gagaaatcatatttgtacaatcattttgtgacaacttcttgaca 657  Q
    ||||||| |||||||||||| || ||||||||||||||||||||    
T  19127124 gagaaatgatatttgtacaaccactttgtgacaacttcttgaca 19127167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 608 - 657
Target Start/End: Complemental strand, 3771083 - 3771034
Alignment:
Q  608 agttcagagaaatcatatttgtacaatcattttgtgacaacttcttgaca 657  Q
    |||| |||||||| |||| ||||||| |||||||||||||||| ||||||    
T  3771083 agtttagagaaatgatatctgtacaaccattttgtgacaactttttgaca 3771034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Complemental strand, 3960241 - 3960204
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  3960241 agagaaatcatatttgtataatcattttttgacaactt 3960204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Original strand, 14914371 - 14914408
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  14914371 agagaaatgatatttgtacaaccattttgtgacaactt 14914408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 614 - 655
Target Start/End: Original strand, 42699057 - 42699098
Alignment:
Q  614 gagaaatcatatttgtacaatcattttgtgacaacttcttga 655  Q
    ||||||| |||||||||||| |||||||||||||||| ||||    
T  42699057 gagaaatgatatttgtacaaccattttgtgacaactttttga 42699098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 291 - 329
Target Start/End: Original strand, 27879973 - 27880011
Alignment:
Q  291 tgaaaaacgatatccataaccactcatcaccactactca 329  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  27879973 tgaaaaacgaaatccataaccactcatcaccactactca 27880011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 613 - 650
Target Start/End: Complemental strand, 22353236 - 22353199
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| |||||||||||||||||||||||||||||    
T  22353236 agagaaatgatatttgtacaatcattttgtgacaactt 22353199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 20572331 - 20572273
Alignment:
Q  291 tgaaaaacgatatccataaccactcatcaccactactcatctcaacgtaacacccctcta 350  Q
    ||||||||||||||||||||||| |||| |||||||||| |||||   ||||||||||||    
T  20572331 tgaaaaacgatatccataaccac-catcgccactactcacctcaaaagaacacccctcta 20572273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 708
Target Start/End: Original strand, 17999808 - 17999861
Alignment:
Q  655 acattatatttttattctatctaccattttctctcttcattatttttgaccaat 708  Q
    ||||||| |||||||||| ||| || |||||||||| |||| ||||||||||||    
T  17999808 acattatctttttattctctcttcctttttctctctgcattgtttttgaccaat 17999861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Complemental strand, 27307303 - 27307266
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  27307303 agagaaatgatatttgtacaatcaatttgtgacaactt 27307266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Original strand, 29795446 - 29795483
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  29795446 agagaaatgatatttgtacaaccattttgtgacaactt 29795483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Complemental strand, 36909915 - 36909878
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  36909915 agagaaatgatatttgtacaaccattttgtgacaactt 36909878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 613 - 653
Target Start/End: Complemental strand, 8379 - 8339
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaacttctt 653  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  8379 agagaaattatatttgtacaaccattttgtgacaacttctt 8339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 613 - 657
Target Start/End: Original strand, 48945846 - 48945890
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 657  Q
    |||||||| |||||||||||| || ||||||||||||||||||||    
T  48945846 agagaaatgatatttgtacaaccactttgtgacaacttcttgaca 48945890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 613 - 657
Target Start/End: Complemental strand, 55344368 - 55344324
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaacttcttgaca 657  Q
    |||||||| |||||||||||| |||||||||| ||||||||||||    
T  55344368 agagaaatgatatttgtacaaccattttgtgataacttcttgaca 55344324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 613 - 652
Target Start/End: Complemental strand, 3958090 - 3958051
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaacttct 652  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  3958090 agagaaatgatatttgtacaatcaatttgtgacaacttct 3958051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 657
Target Start/End: Complemental strand, 20380960 - 20380917
Alignment:
Q  614 gagaaatcatatttgtacaatcattttgtgacaacttcttgaca 657  Q
    ||||||| |||||||||||| || ||||||||||||||||||||    
T  20380960 gagaaatgatatttgtacaaccactttgtgacaacttcttgaca 20380917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 615 - 657
Target Start/End: Complemental strand, 31206921 - 31206879
Alignment:
Q  615 agaaatcatatttgtacaatcattttgtgacaacttcttgaca 657  Q
    |||||| |||||||||||||||||||||||||| || ||||||    
T  31206921 agaaatgatatttgtacaatcattttgtgacaaatttttgaca 31206879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Complemental strand, 7286 - 7249
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  7286 agagaaatgatatttgtacaatcattttctgacaactt 7249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Original strand, 1765403 - 1765440
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  1765403 agagaaatgatatttgtacattcattttgtgacaactt 1765440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Original strand, 8254026 - 8254063
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  8254026 agagaaatgatatttgtacaaccattttgtgacaactt 8254063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Complemental strand, 34021535 - 34021498
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  34021535 agagaaatgatatttgtacaatcaatttgtgacaactt 34021498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Complemental strand, 35074162 - 35074125
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  35074162 agagaaatgatatttgtacaatcattttgggacaactt 35074125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Complemental strand, 43169814 - 43169777
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  43169814 agagaaatgatatttgtacaaccattttgtgacaactt 43169777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Original strand, 47683800 - 47683837
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  47683800 agagaaatgatatttgtacaaccattttgtgacaactt 47683837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Original strand, 48405409 - 48405446
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  48405409 agagaaatgatatttgtacaaccattttgtgacaactt 48405446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Original strand, 49196695 - 49196732
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  49196695 agagaaatgatatttgtacaaccattttgtgacaactt 49196732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Complemental strand, 52454166 - 52454129
Alignment:
Q  613 agagaaatcatatttgtacaatcattttgtgacaactt 650  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  52454166 agagaaatgatatttgtacaatcaatttgtgacaactt 52454129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University