View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_60 (Length: 407)
Name: NF8921_low_60
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_60 |
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| [»] chr1 (5 HSPs) |
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| [»] scaffold0015 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 10 - 407
Target Start/End: Complemental strand, 25428290 - 25427897
Alignment:
| Q |
10 |
gaagcagagattcagaaaacaccaaaataattgatgggaggaacatgcctagttatgcaccaaaaggtcataatcaaagattagaagcttaaagtccaag |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25428290 |
gaagcaaagattcagaaaacaccaaaataattgatgggaggaacatgcctagttatgcaccaaaaggtcataatcaaagattagaagcttaaagtccaag |
25428191 |
T |
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| Q |
110 |
cacaaggaataacaaccatttttaaaagtttcttggtcaccaaggcaagccattaaaggacnnnnnnncagatagttttccaatggctaatttccttact |
209 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25428190 |
cacaaggaataacaactatttttaaaagtttcttggtcaccaaggcaagccattaaaggacaaaaaaacagatagttttccaatggctaatttccttact |
25428091 |
T |
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| Q |
210 |
ttttcaccaagacaaagctctctataagcactccatcattcaagacaaacatatctttccacaacatctctcatatttttgcattagaatcagatctcaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25428090 |
ttttcaccaagacaaagctctctataagcactccatcattcaag----acatgtctttccacaacatctctcatatttttgcattagaataagatctcaa |
25427995 |
T |
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| Q |
310 |
aaagatcataagcagaaactcaagattgcttgaaaaagatcagagtcatatcttctcaacttgagattcactctcaagcattagatattaatcacaga |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25427994 |
aaagatcataagcagaaactcaagattgcttgaaaaagatcagagtcatatcttctcaacttgagattcactctcaagcattagatatcaatcacaga |
25427897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 235 - 379
Target Start/End: Original strand, 13104454 - 13104598
Alignment:
| Q |
235 |
aagcactccatcattcaagacaaacat--atctttccacaacatctctcatatttttgcattagaatcagatctcaaaaagatcataagcagaaactcaa |
332 |
Q |
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|||||| ||||||||||||| |||||| |||| ||||||| ||||||||||||| | ||| || |||| ||| ||||||||| | ||||||||| |||| |
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| T |
13104454 |
aagcacaccatcattcaagagaaacatgaatctctccacaaaatctctcatatttctacatgaggatcaaatcccaaaaagattaaaagcagaaaatcaa |
13104553 |
T |
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| Q |
333 |
gattgcttgaaaaagatcagagtcatatcttctcaacttgagattca |
379 |
Q |
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| T |
13104554 |
gattgtttgaaaaagatcacattc--atcttctgaactttagattca |
13104598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 235 - 351
Target Start/End: Original strand, 13090834 - 13090952
Alignment:
| Q |
235 |
aagcactccatcattcaagacaaacat--atctttccacaacatctctcatatttttgcattagaatcagatctcaaaaagatcataagcagaaactcaa |
332 |
Q |
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|||||| ||||||||||||| |||||| |||| ||||||| ||||||||||||| | ||| || |||| ||| ||||||||| | ||||||||| |||| |
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| T |
13090834 |
aagcacaccatcattcaagagaaacatgaatctctccacaaaatctctcatatttctacatgaggatcaaatcccaaaaagattaaaagcagaaaatcaa |
13090933 |
T |
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| Q |
333 |
gattgcttgaaaaagatca |
351 |
Q |
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||||| ||||||||||||| |
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| T |
13090934 |
gattgtttgaaaaagatca |
13090952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 235 - 379
Target Start/End: Complemental strand, 13185004 - 13184860
Alignment:
| Q |
235 |
aagcactccatcattcaagacaaacat--atctttccacaacatctctcatatttttgcattagaatcagatctcaaaaagatcataagcagaaactcaa |
332 |
Q |
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|||||||||||||||||||| |||||| |||| ||||||| ||||||||||||| | ||| || |||| ||| |||||||| | ||||||||| | || |
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| T |
13185004 |
aagcactccatcattcaagagaaacatgaatctctccacaaaatctctcatatttctacatgaggatcaaatcccaaaaagaataaaagcagaaaattaa |
13184905 |
T |
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| Q |
333 |
gattgcttgaaaaagatcagagtcatatcttctcaacttgagattca |
379 |
Q |
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| T |
13184904 |
gattgtttgaaaaagatcacattc--atcttctgaactttagattca |
13184860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 294 - 396
Target Start/End: Complemental strand, 26330855 - 26330756
Alignment:
| Q |
294 |
tagaatcagatctcaaaaagatcataagcagaaactcaagattgcttgaaaaagatcagagtcatatcttctcaacttgagattcactctcaagcattag |
393 |
Q |
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|||||||||||| |||||||||| ||||||||| |||||||| ||||||||| |||||| || |||||| ||||||||||||| |||||| |||||| |
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| T |
26330855 |
tagaatcagatccaaaaaagatcagaagcagaaaatcaagattacttgaaaaatatcagaatc--atcttc-aaacttgagattcattctcaaacattag |
26330759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 353
Target Start/End: Complemental strand, 19411543 - 19411481
Alignment:
| Q |
291 |
cattagaatcagatctcaaaaagatcataagcagaaactcaagattgcttgaaaaagatcaga |
353 |
Q |
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| T |
19411543 |
cattagaatcagatcacaaaaagatcaaaagaagaaaatcaagattacttgaaaaagatcaga |
19411481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 346
Target Start/End: Original strand, 55368 - 55507
Alignment:
| Q |
204 |
cttactttttcaccaagacaaagctctctataagcactccatcattcaagacaaacatatctttccacaacatctctcatatttttgcattagaatcaga |
303 |
Q |
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||||||| |||| ||||||||| |||| || ||| || |||||||||||| ||||| | || ||||||||| || |||| || | ||| | ||||| | |
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| T |
55368 |
cttacttgttcaacaagacaaaactctata-aagtacatcatcattcaagagaaacacacctctccacaacaactatcat--ttctccatcataatcaaa |
55464 |
T |
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| Q |
304 |
tctcaaaaagatcataagcagaaactcaagattgcttgaaaaa |
346 |
Q |
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| T |
55465 |
tcccaaaaagatcagaagcagaaaatcaagattgcttcaaaaa |
55507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 346
Target Start/End: Complemental strand, 57484 - 57345
Alignment:
| Q |
204 |
cttactttttcaccaagacaaagctctctataagcactccatcattcaagacaaacatatctttccacaacatctctcatatttttgcattagaatcaga |
303 |
Q |
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||||||| |||| ||||||||| |||| || ||| || |||||||||||| ||||| | || ||||||||| || |||| || | ||| | ||||| | |
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| T |
57484 |
cttacttgttcaacaagacaaaactctata-aagtacatcatcattcaagagaaacacacctctccacaacaactatcat--ttctccatcataatcaaa |
57388 |
T |
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| Q |
304 |
tctcaaaaagatcataagcagaaactcaagattgcttgaaaaa |
346 |
Q |
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|| ||||||||||| ||||||||| |||||||||||| ||||| |
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| T |
57387 |
tcccaaaaagatcagaagcagaaaatcaagattgcttcaaaaa |
57345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 33385821 - 33385863
Alignment:
| Q |
18 |
gattcagaaaacaccaaaataattgatgggaggaacatgccta |
60 |
Q |
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| T |
33385821 |
gattcaaaaaacaccaaaataattgatggaagaaacatgccta |
33385863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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