View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8921_low_64 (Length: 399)
Name: NF8921_low_64
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_64 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 15 - 386
Target Start/End: Original strand, 50396173 - 50396570
Alignment:
| Q |
15 |
atcaaacaaaccagcaaatttgtcgattaccggatgaaccggctggttttaaaacaatgatccatacaatgataacatagatggatagatag-------- |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50396173 |
atcaaacaaaccagcaaatttgtcgattcccggatgaaccggctggttttaaaacaatgatccatacaataataacatagatggatagatagatagatcc |
50396272 |
T |
|
| Q |
107 |
--------cttagaatgctacttacttcaatgaaaatatttctagaagaaaataagtgaaacaatctaaggatggatatgtttttccagctatatatatg |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50396273 |
ccattgagcttagaatgctacttacttcaatgaaaatatttctagaagaaaataagtgaaacaatctaaggatggatatgtttttccagctatatatatg |
50396372 |
T |
|
| Q |
199 |
tatttaaataagcagtttatgatggtatgcacgttgctgaatac----------tattgtatatatcttgaattcaatgtgcattataatatacacacat |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50396373 |
tatttaaataagcagtttatgatggtatgcacgttgctgaatactattgtaatgtattgtatatatcttgaattcaatgtgcattataatatacacacat |
50396472 |
T |
|
| Q |
289 |
agctgactatttgagctatgttagtgggagtccgttttgttggttattacttttttcattttcttcaataaccttactttgccttcattggaagaagt |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50396473 |
agctgactatttgagctatgttagtgggagtccgttttgttggttattacttttttcattttcttcaataaccttactttgccttcattggaagaagt |
50396570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University