View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8921_low_65 (Length: 399)
Name: NF8921_low_65
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_65 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 112 - 374
Target Start/End: Complemental strand, 10617721 - 10617452
Alignment:
| Q |
112 |
attggaagagccataattcgctaagcgaaaatccacttttatgaaatctatatgta-------tcagccttgtttttagttattcannnnnnnatccaag |
204 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||| |
|
|
| T |
10617721 |
attggaggagccataattcgctaagcgaaagtccacttttatgaaatctatatgtaaagattctctgccttatttttagttattcatttttttatccaag |
10617622 |
T |
|
| Q |
205 |
agagagaaaatttatcgacagagttactttcattatgaggtccattgtatcttggatatcaagcatttgatgttgatctatccaacttctattttattcc |
304 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10617621 |
agagagaaaatttaccgagagagttactttcattattaggtccattgtattttggatatcaagcatttgatgttgatctacccaacttctattttattcc |
10617522 |
T |
|
| Q |
305 |
tttgtgttagctaccatgaatatgtgtaactaatttcactctatgtgttattaggttagttagctagtgt |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10617521 |
tttgtgttagctaccatgaatatgtgtaactaatttcactctatgtgttattaggttagttagctagtgt |
10617452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 10617815 - 10617786
Alignment:
| Q |
18 |
ttatgcaagtttggagaggtagctcacgat |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10617815 |
ttatgcaagtttggagaggtagctcacgat |
10617786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University