View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_68 (Length: 379)
Name: NF8921_low_68
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_68 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 11 - 379
Target Start/End: Original strand, 29631053 - 29631421
Alignment:
| Q |
11 |
tttggtgttttaaaacattaactttattatggctacgcttgtttctgcagtttcttgttttggacgaagcagaccaacttttggatgttggttttcggga |
110 |
Q |
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| T |
29631053 |
tttggtgttttaaaacattaactttattatggttacacttgtttctgcagtttcttgttttggacgaagcagaccaacttttggatgttggttttcggga |
29631152 |
T |
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| Q |
111 |
tgaattgaatgttatcgtccagtgcttaccagaaaaccggcaaaacctcttcttttcagaaaccatgactagtaatctgaaaaagatgatgtgtgaccgt |
210 |
Q |
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| T |
29631153 |
tgaattgaatgttatcgtccagtgcttaccagaaaaccggcaaaacctcttcttttcagaaaccatgactagtaatctgaaaaagatgatgtatgaccgt |
29631252 |
T |
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| Q |
211 |
tatcgagataacatgtatgccttcgaggcttgtgaagggctgaagttgcttgagcatttgaagattgatcaagtatgattccaacactgtttaattatgt |
310 |
Q |
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| T |
29631253 |
tatcgagataacatgtatgccttcgaggcttgtgaagggctgaagttgcttgagcatttgaagattgatcaagtatgattccaacactgtttaattatgt |
29631352 |
T |
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| Q |
311 |
ttgcattaccacatttccattgatttctgtggtcttagcgtttggattcaattttgggaaatagccaaa |
379 |
Q |
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| T |
29631353 |
ttgcattaccacatttccattgatttatgtggtcttagtgtttggattcaattttgggaaatagccaaa |
29631421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 48 - 318
Target Start/End: Original strand, 29632301 - 29632575
Alignment:
| Q |
48 |
cttgtttctgcagtttcttgttttggacgaagcagaccaacttttggatgttggttttcgggatgaattgaatgttatcgtccagtgcttaccagaaaac |
147 |
Q |
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| T |
29632301 |
cttgcttctgcagtttcttgtcttggatgaagcagaccaactcttggatgttggttttcaggaggagttgaaagtgatcttccagtgcttaccagaaaac |
29632400 |
T |
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| Q |
148 |
cggcaaaacctcttcttttcagaaaccatgactagtaatctgaaaaagatgatgtgtgaccgttatcgagata------acatgtatgccttcgaggctt |
241 |
Q |
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| T |
29632401 |
cggcaaaacctgttcttttcagcaaccatgactagtaatctgcaaaa---gatgtgtgactgttattaagataacatgtacatgtatgctttcgaggctt |
29632497 |
T |
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| Q |
242 |
gtgaaggg-ctgaagttgcttgagcatttgaagattgatcaagtatgattccaacactgtttaattatgtttgcatta |
318 |
Q |
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| T |
29632498 |
aggaagggatttaaggtgcctgagcatttgaagattgatgaagtatgattggaagactgtttaattatgcttgcatta |
29632575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 56 - 249
Target Start/End: Complemental strand, 27662869 - 27662679
Alignment:
| Q |
56 |
tgcagtttcttgttttggacgaagcagaccaacttttggatgttggttttcgggatgaattgaatgttatcgtccagtgcttaccagaaaaccggcaaaa |
155 |
Q |
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| T |
27662869 |
tgcagtttcttgtcttggatgaagcagatcgagtcctggatgttggttttcaggatgaattgaaatttatatttcagtgcttaccagaaaaccggcaaaa |
27662770 |
T |
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| Q |
156 |
cctcttcttttcagaaaccatgactagtaatctgaaaaagatgatgtgtgaccgttatcgagataacatgtatgccttcgaggcttgtgaaggg |
249 |
Q |
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| T |
27662769 |
cctattcttttctgcaacaacaactagtaatttgcaaaa---gttgcgtgagcgttatcaagataagttgtatgcctttgaagcttatgaaggg |
27662679 |
T |
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