View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8921_low_69 (Length: 366)

Name: NF8921_low_69
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8921_low_69
NF8921_low_69
[»] chr4 (10 HSPs)
chr4 (1-357)||(40783645-40784006)
chr4 (4-67)||(7012049-7012112)
chr4 (1-41)||(46180946-46180986)
chr4 (1-65)||(56488520-56488584)
chr4 (4-63)||(20743291-20743350)
chr4 (8-67)||(24343490-24343549)
chr4 (4-65)||(7424655-7424716)
chr4 (1-46)||(18513251-18513296)
chr4 (1-65)||(22440610-22440674)
chr4 (15-67)||(44796986-44797038)
[»] chr8 (8 HSPs)
chr8 (1-67)||(34897068-34897134)
chr8 (1-64)||(24362212-24362275)
chr8 (1-55)||(3508047-3508101)
chr8 (4-43)||(14513187-14513226)
chr8 (1-64)||(39954289-39954352)
chr8 (1-51)||(4611533-4611583)
chr8 (1-43)||(37225753-37225795)
chr8 (4-65)||(3658132-3658193)
[»] chr6 (10 HSPs)
chr6 (1-67)||(13851719-13851785)
chr6 (4-64)||(12086358-12086418)
chr6 (1-67)||(9027161-9027227)
chr6 (20-77)||(10760870-10760927)
chr6 (1-66)||(7265603-7265668)
chr6 (1-58)||(19040344-19040401)
chr6 (3-67)||(9658862-9658926)
chr6 (17-65)||(13211307-13211355)
chr6 (15-63)||(15443682-15443730)
chr6 (4-44)||(34446571-34446611)
[»] scaffold0598 (1 HSPs)
scaffold0598 (4-67)||(8066-8129)
[»] chr2 (7 HSPs)
chr2 (1-67)||(21616745-21616811)
chr2 (8-68)||(19573961-19574020)
chr2 (4-51)||(10535772-10535819)
chr2 (1-64)||(18889601-18889663)
chr2 (5-60)||(30298461-30298516)
chr2 (15-58)||(44605163-44605206)
chr2 (1-46)||(18570976-18571021)
[»] scaffold0004 (1 HSPs)
scaffold0004 (8-68)||(92789-92849)
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-64)||(99879-99942)
[»] chr7 (4 HSPs)
chr7 (1-68)||(38134416-38134483)
chr7 (14-67)||(26733287-26733340)
chr7 (8-65)||(32308105-32308162)
chr7 (15-67)||(19206033-19206085)
[»] chr3 (5 HSPs)
chr3 (4-43)||(3730178-3730217)
chr3 (1-60)||(16192760-16192819)
chr3 (1-44)||(20691325-20691368)
chr3 (4-58)||(25074781-25074835)
chr3 (1-67)||(37077341-37077407)
[»] chr1 (4 HSPs)
chr1 (1-64)||(17831541-17831604)
chr1 (1-67)||(20157360-20157426)
chr1 (14-67)||(2896144-2896197)
chr1 (8-64)||(36878447-36878503)
[»] chr5 (5 HSPs)
chr5 (1-51)||(2577190-2577240)
chr5 (4-65)||(26205773-26205834)
chr5 (1-58)||(28296320-28296377)
chr5 (5-57)||(11596469-11596521)
chr5 (4-44)||(18607110-18607150)
[»] scaffold0024 (1 HSPs)
scaffold0024 (15-64)||(18132-18181)
[»] scaffold0018 (1 HSPs)
scaffold0018 (16-68)||(192274-192326)


Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 40784006 - 40783645
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtccgtacttcatagactgtatctctggctgctattttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  40784006 acatatgattacgctgaattatgttattatctcaaattattatcggcgtcgacatgtcggtgtccatacttcatagactgtatctctggctgctattttt 40783907  T
Q  101 atagggactagtttatgcctaattcaactcaaaaagtagctcaagaggtgggattggccaaaccgtataaggacaactttttccatatgttggatctagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40783906 atagggactagtttatgcctaattcaactcaaaaagtagctcaagaggtgggattggccaaaccgtataaggacaactttttccatatgttggatctagg 40783807  T
Q  201 ta-----tatctgggccatatggcacccatgttgtataaagtatccgagcttcatagcaagtcattatgaagtattttgatcattctgttgatttcatgt 295  Q
    ||     ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40783806 tagttagtatctgggccatatggcacccatgttgtataaagtatccaagcttcatagcaagtcattatgaagtattttgatcattctgttgatttcatgt 40783707  T
Q  296 ctataatgaatggctaaacctgattgtactgtgtttttcgtgttatgtaaagcatgatgtcc 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40783706 ctataatgaatggctaaacctgattgtactgtgtttttcgtgttatgtaaagcatgatgtcc 40783645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 7012112 - 7012049
Alignment:
Q  4 tatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtccgt 67  Q
    |||||| || ||||||||||| ||| ||||||||||||||||| |||| |||||||||||||||    
T  7012112 tatgatcacactgaattatgtcattttctcaaattattatcggtgtcggcgtgtcggtgtccgt 7012049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 46180946 - 46180986
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattatt 41  Q
    |||||||||||| ||||||||||||||| ||||||||||||    
T  46180946 acatatgattacactgaattatgttattttctcaaattatt 46180986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 56488520 - 56488584
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtcc 65  Q
    |||||||||||| ||||||||| | ||| ||||||||| ||| ||| ||| ||||||||||||||    
T  56488520 acatatgattaccctgaattatatgattttctcaaattgttagcggtgtcaacgtgtcggtgtcc 56488584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 20743291 - 20743350
Alignment:
Q  4 tatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgt 63  Q
    ||||||||| ||||||||||| ||| ||||||||||||||| | |||| |||||| ||||    
T  20743291 tatgattacactgaattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgt 20743350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 24343549 - 24343490
Alignment:
Q  8 attacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtccgt 67  Q
    ||||| ||||||||||| ||| ||||||||||||||| | |||| |||||||| ||||||    
T  24343549 attacactgaattatgtaattttctcaaattattatccgtgtcggcgtgtcggcgtccgt 24343490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 7424716 - 7424655
Alignment:
Q  4 tatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtcc 65  Q
    ||||||||| || |||||| ||||| ||| ||||||||||||| || || ||||||||||||    
T  7424716 tatgattacactcaattatattattttcttaaattattatcggtgttgatgtgtcggtgtcc 7424655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 18513251 - 18513296
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatcgg 46  Q
    ||||||||||||  |||||||||| ||| |||||||||||||||||    
T  18513251 acatatgattacattgaattatgtcattttctcaaattattatcgg 18513296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 22440610 - 22440674
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtcc 65  Q
    |||||| ||||| ||||||||||| ||| ||||||||||||| ||| ||||| || || ||||||    
T  22440610 acatataattacactgaattatgtgattttctcaaattattaacggtgtcgatgtatcagtgtcc 22440674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 44796986 - 44797038
Alignment:
Q  15 tgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtccgt 67  Q
    |||||||||||||| |||||||||||| |||| || ||| |||| ||||||||    
T  44796986 tgaattatgttattttctcaaattattgtcggtgttgacatgtctgtgtccgt 44797038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 34897134 - 34897068
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtccgt 67  Q
    |||||| ||||| ||||||||||| ||| ||||||||||||| ||| ||||||||||| ||||||||    
T  34897134 acatataattacactgaattatgtgattttctcaaattattagcggtgtcgacgtgtctgtgtccgt 34897068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 24362212 - 24362275
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtc 64  Q
    |||||| ||||| ||||||||||| ||| ||||||||||||| ||| |||| ||||||||||||    
T  24362212 acatataattacactgaattatgtgattctctcaaattattagcggtgtcggcgtgtcggtgtc 24362275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 3508101 - 3508047
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgt 55  Q
    ||||||||||||  |||||||||||||| ||||||||||||||| || |||||||    
T  3508101 acatatgattacattgaattatgttattttctcaaattattatcagcatcgacgt 3508047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 14513187 - 14513226
Alignment:
Q  4 tatgattacgctgaattatgttattatctcaaattattat 43  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  14513187 tatgattacgctgaattatgtaattttctcaaattattat 14513226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 39954289 - 39954352
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtc 64  Q
    |||||| ||||| || |||||||| ||| ||||||||||||| ||| |||| ||||||||||||    
T  39954289 acatataattacactaaattatgtgattttctcaaattattagcggtgtcggcgtgtcggtgtc 39954352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 4611583 - 4611533
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatcggcgtcg 51  Q
    |||||| ||||| ||||||||||||||| ||||||||||||| ||| ||||    
T  4611583 acatataattacactgaattatgttattttctcaaattattagcggtgtcg 4611533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 37225753 - 37225795
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattat 43  Q
    ||||||||||||  |||||||||||||| ||||||||||||||    
T  37225753 acatatgattacattgaattatgttattttctcaaattattat 37225795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 3658193 - 3658132
Alignment:
Q  4 tatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtcc 65  Q
    ||||||||| ||||| ||  ||||| ||||||||||||||| | ||||| ||||||||||||    
T  3658193 tatgattacactgaactacattattttctcaaattattatccgtgtcgatgtgtcggtgtcc 3658132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 13851785 - 13851719
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtccgt 67  Q
    |||||| ||||| |||||||| |||||| ||||||||||||| ||| ||||||||||| ||||||||    
T  13851785 acatataattacactgaattacgttattttctcaaattattagcggtgtcgacgtgtcagtgtccgt 13851719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 12086358 - 12086418
Alignment:
Q  4 tatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtc 64  Q
    ||||||||  ||||||||||| ||||||||||||||||||| | |||||||||| ||||||    
T  12086358 tatgattaaactgaattatgtcattatctcaaattattatccgtgtcgacgtgtaggtgtc 12086418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 9027227 - 9027161
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtccgt 67  Q
    |||||| ||||| | ||||||||| ||||||||||||||||| ||| |||| |||||| ||||||||    
T  9027227 acatataattacacggaattatgtgattatctcaaattattagcggtgtcggcgtgtcagtgtccgt 9027161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 10760870 - 10760927
Alignment:
Q  20 tatgttattatctcaaattattatcggcgtcgacgtgtcggtgtccgtacttcataga 77  Q
    ||||| ||| ||||||||||||||| | ||||||||||| |||||||| |||||||||    
T  10760870 tatgtcattttctcaaattattatcagtgtcgacgtgtcagtgtccgtgcttcataga 10760927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7265603 - 7265668
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtccg 66  Q
    |||||| ||||| ||||||||||| ||| ||||||||||||| ||| || | |||||| |||||||    
T  7265603 acatataattacactgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtccg 7265668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 19040401 - 19040344
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtc 58  Q
    |||||| ||||| ||||||||||| ||| ||||||||||||| ||| |||| ||||||    
T  19040401 acatataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtc 19040344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 9658926 - 9658862
Alignment:
Q  3 atatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtccgt 67  Q
    |||| ||||| ||||||||||| ||| ||| ||||||||| ||| |||| |||||| ||||||||    
T  9658926 atataattacactgaattatgtgattttcttaaattattagcggtgtcggcgtgtcagtgtccgt 9658862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 13211307 - 13211355
Alignment:
Q  17 aattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtcc 65  Q
    |||||||| ||| |||||||||||||||   ||||||||||||||||||    
T  13211307 aattatgtcattttctcaaattattatcaatgtcgacgtgtcggtgtcc 13211355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 15443730 - 15443682
Alignment:
Q  15 tgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgt 63  Q
    |||||||||||||| |||||||||||||| |  ||||||||||| ||||    
T  15443730 tgaattatgttattttctcaaattattattgatgtcgacgtgtcagtgt 15443682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 34446611 - 34446571
Alignment:
Q  4 tatgattacgctgaattatgttattatctcaaattattatc 44  Q
    ||||||||| ||||||||||| ||| |||||||||||||||    
T  34446611 tatgattacactgaattatgtcattttctcaaattattatc 34446571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 8066 - 8129
Alignment:
Q  4 tatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtccgt 67  Q
    |||| |||| ||||||||||| ||| ||||||||||||||| |  |||||||||||||||||||    
T  8066 tatgtttacactgaattatgtcattttctcaaattattatccgtatcgacgtgtcggtgtccgt 8129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 21616811 - 21616745
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtccgt 67  Q
    |||||| ||||| ||||||||||| ||| ||||||||||||| ||| |||| |||||| ||||||||    
T  21616811 acatataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtccgtgtccgt 21616745  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 19574020 - 19573961
Alignment:
Q  8 attacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtccgta 68  Q
    ||||| ||||||||||||||| ||| ||||||||||||| |||| |||||| |||||||||    
T  19574020 attacactgaattatgttattttcttaaattattatcggtgtcggcgtgtc-gtgtccgta 19573961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 10535772 - 10535819
Alignment:
Q  4 tatgattacgctgaattatgttattatctcaaattattatcggcgtcg 51  Q
    ||||||||| ||||||||||| ||| ||||||||||||||||| ||||    
T  10535772 tatgattacactgaattatgtcattttctcaaattattatcggtgtcg 10535819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 18889601 - 18889663
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtc 64  Q
    |||||||||||| ||||||||||| ||| |||||| |||||| |||||||| |||||| |||||    
T  18889601 acatatgattacactgaattatgtgattttctcaatttattagcggcgtcg-cgtgtccgtgtc 18889663  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 30298461 - 30298516
Alignment:
Q  5 atgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcgg 60  Q
    |||||||| ||||||||||| ||| | | ||||||||||||| |||||||||||||    
T  30298461 atgattacactgaattatgtcattttattaaattattatcggtgtcgacgtgtcgg 30298516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 44605163 - 44605206
Alignment:
Q  15 tgaattatgttattatctcaaattattatcggcgtcgacgtgtc 58  Q
    |||||||||||||| |||||||||||||| ||||| ||||||||    
T  44605163 tgaattatgttattttctcaaattattattggcgttgacgtgtc 44605206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 18571021 - 18570976
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatcgg 46  Q
    ||||||||||||  |||||||||| ||| |||||||||||||||||    
T  18571021 acatatgattacattgaattatgtcattttctcaaattattatcgg 18570976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 92849 - 92789
Alignment:
Q  8 attacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtccgta 68  Q
    ||||| ||||||||||| ||| ||||||||||||| ||| |||| |||||| |||||||||    
T  92849 attacactgaattatgtaattttctcaaattattagcggtgtcggcgtgtcagtgtccgta 92789  T

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Target: scaffold0022 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 99942 - 99879
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtc 64  Q
    |||||| |||||  |||||||||||||| ||| ||||||||||||| |||||| |||| |||||    
T  99942 acatataattacattgaattatgttattttctaaaattattatcggtgtcgacatgtccgtgtc 99879  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 38134416 - 38134483
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtccgta 68  Q
    ||||||||||||  |||||||||| ||| ||||||||||||||||| ||| || ||||  ||||||||    
T  38134416 acatatgattacattgaattatgtcattttctcaaattattatcggtgtcaacatgtccatgtccgta 38134483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 26733340 - 26733287
Alignment:
Q  14 ctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtccgt 67  Q
    ||||||||||| ||| | ||||||||||| ||| ||||||||||| ||||||||    
T  26733340 ctgaattatgtgattttgtcaaattattagcggtgtcgacgtgtcagtgtccgt 26733287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 32308162 - 32308105
Alignment:
Q  8 attacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtcc 65  Q
    ||||| ||||||||||| ||| ||||||||||||| ||| |||| |||||| ||||||    
T  32308162 attacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtcc 32308105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 19206085 - 19206033
Alignment:
Q  15 tgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtccgt 67  Q
    |||||||||| ||| ||||||||||||| ||| |||| ||||| |||||||||    
T  19206085 tgaattatgtgattttctcaaattattagcggtgtcggcgtgttggtgtccgt 19206033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 3730178 - 3730217
Alignment:
Q  4 tatgattacgctgaattatgttattatctcaaattattat 43  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  3730178 tatgattacactgaattatgtcattatctcaaattattat 3730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 16192760 - 16192819
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcgg 60  Q
    |||||| ||||| ||||||||||||||| ||||||||||||| ||| ||||  |||||||    
T  16192760 acatataattacactgaattatgttattttctcaaattattaacggtgtcggtgtgtcgg 16192819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 20691368 - 20691325
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatc 44  Q
    |||||||||||| ||||||||||| ||| |||||||||||||||    
T  20691368 acatatgattacactgaattatgtcattttctcaaattattatc 20691325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 25074835 - 25074781
Alignment:
Q  4 tatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtc 58  Q
    ||||||||| || |||||||| ||| ||||||||||||||||| |||| ||||||    
T  25074835 tatgattacactcaattatgtcattttctcaaattattatcggtgtcggcgtgtc 25074781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 37077407 - 37077341
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtccgt 67  Q
    |||||||||| |  |||||||||||||  ||||||||||||||||| |||| ||||||  |||||||    
T  37077407 acatatgattccattgaattatgttatattctcaaattattatcggtgtcggcgtgtcactgtccgt 37077341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 17831541 - 17831604
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtc 64  Q
    |||||||||||| |||||| |||| ||| ||||||||||||| ||| |||| |||||| |||||    
T  17831541 acatatgattacactgaataatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 17831604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 20157360 - 20157426
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtccgt 67  Q
    |||||||||||| ||||||||||| ||| ||||| ||||||| ||| ||||| ||||| ||| ||||    
T  20157360 acatatgattacactgaattatgtgattttctcacattattagcggtgtcgatgtgtcagtgcccgt 20157426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 2896144 - 2896197
Alignment:
Q  14 ctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtccgt 67  Q
    ||||||||||| ||| ||||||||||||| ||| |||| |||||| ||||||||    
T  2896144 ctgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtccgt 2896197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 36878503 - 36878447
Alignment:
Q  8 attacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtc 64  Q
    ||||| ||||||||||| ||| ||||||||||||| ||| |||| |||||| |||||    
T  36878503 attacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 36878447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 2577190 - 2577240
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatcggcgtcg 51  Q
    |||||||||||| || |||||||| ||| ||||||||||||||||| ||||    
T  2577190 acatatgattacactaaattatgtcattttctcaaattattatcggtgtcg 2577240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 26205773 - 26205834
Alignment:
Q  4 tatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtcc 65  Q
    ||||||||| ||||||||||| ||| ||||||| | |||||||  |||||||||| ||||||    
T  26205773 tatgattacactgaattatgtcattttctcaaaattttatcggtatcgacgtgtcagtgtcc 26205834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 28296377 - 28296320
Alignment:
Q  1 acatatgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgtc 58  Q
    |||||||| |||  |||||||||| ||| ||||||||||||||||| |||||| ||||    
T  28296377 acatatgagtacattgaattatgtcattttctcaaattattatcggtgtcgacttgtc 28296320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 11596469 - 11596521
Alignment:
Q  5 atgattacgctgaattatgttattatctcaaattattatcggcgtcgacgtgt 57  Q
    ||||||||  |||||||||| ||| |||||||||||||||||  |||||||||    
T  11596469 atgattacattgaattatgtcattttctcaaattattatcggtatcgacgtgt 11596521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 18607110 - 18607150
Alignment:
Q  4 tatgattacgctgaattatgttattatctcaaattattatc 44  Q
    |||||||||  |||||||||||||| |||||||||||||||    
T  18607110 tatgattacattgaattatgttattttctcaaattattatc 18607150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 18132 - 18181
Alignment:
Q  15 tgaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtc 64  Q
    |||||||||||||| ||||||| | ||||||| ||||||||||| |||||    
T  18132 tgaattatgttattttctcaaaattttatcggtgtcgacgtgtcagtgtc 18181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 192274 - 192326
Alignment:
Q  16 gaattatgttattatctcaaattattatcggcgtcgacgtgtcggtgtccgta 68  Q
    ||||||||| ||| ||||||||||||| ||| |||| |||||| |||||||||    
T  192274 gaattatgtaattttctcaaattattaacggtgtcggcgtgtcagtgtccgta 192326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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