View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8921_low_7 (Length: 834)
Name: NF8921_low_7
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_7 |
 | |
|
| [»] scaffold0054 (2 HSPs) |
| | |
|
| [»] scaffold0134 (1 HSPs) |
| | |
|
| [»] scaffold0613 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 251 - 818
Target Start/End: Complemental strand, 7794377 - 7793810
Alignment:
| Q |
251 |
ataaaacatccaacat-ataatgtgacagtaaactttctagtacttgtgtatgaaactaaaaataactatccaacatttattcttttcaatgatttcaaa |
349 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7794377 |
ataaaacatccaacattataatgtgatagtaaactttctagtacttgtgtatgaaactaaaaataactatccaacatttattcttttcaatgatttcaaa |
7794278 |
T |
|
| Q |
350 |
atcaattagtttgcaaataaaaagagactaaacattnnnnnnnnnnttataaatcaagatcaaatgatttcataatttagttccaaataatttttatatg |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7794277 |
atcaattagtttgcaaataaaaagagactaaacattaaaaaaaaa-ttataaatcaagatcaaatgatttcataatttagttccaaataatttttatatg |
7794179 |
T |
|
| Q |
450 |
cataattgactagtcatttttcacaaaaggtaatttcttaataaccataatcatatacctcttgctgaaaaccagaaaacacaatcaattacttattcct |
549 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7794178 |
cacaattgactagtcatttttcacaaaaggtaatatcttaataaccataatcatatacctcttgctgaaaaccagaaaacacaatcaattacttattcct |
7794079 |
T |
|
| Q |
550 |
ccatcgcatgaatgatttccttgtatataattatctgagttgaaatatcccttgctttatagccaagctcttcaatcatttgggtacttagatcaaacca |
649 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7794078 |
ccatcgcatgaatgatttccttgtatataattatctgagttgaaatatcccttgctttatagccaagctcttcaatcatttgggtacttagatcaaacaa |
7793979 |
T |
|
| Q |
650 |
tgctaattctttgtcttttctttggaagaaaatttcccctttcgtccctactccaataggacgctcgatgaaagaaaatggtccaacgatgaagagttta |
749 |
Q |
| |
|
| |||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7793978 |
tactaattctctgtcttttctttggaagaatatttcccctttcgtccccactccaataggacgctcgatgaaagaaaatggtccaataatgaagagttta |
7793879 |
T |
|
| Q |
750 |
gtccacgatcccttcacaccgagttcatccaaaatggctatatggaaattattagtcacatcatgaaat |
818 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7793878 |
gtccacgatcccttcacaccgaatttatccaaaatggctatatggaaattattagtcacttcatgaaat |
7793810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 7795655 - 7795482
Alignment:
| Q |
14 |
cagagataagagggagagagtccctgcaaccatatccagccaaagcagtgtcaccgtctctccattgtgttgtgtcattcgggaataacgagtgtacgag |
113 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7795655 |
cagagataagatggagagagtccctgcaaccatagccagccaaaccagcgtcaccgtctctccattgtgttgtgtcattcgggaataacgagtgtacgag |
7795556 |
T |
|
| Q |
114 |
aaaccaggtgttcgtttgggcgctggtagtccaacacttctgtttttctgtcttccgatttatctcttccctct |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7795555 |
aaaccaggtgttcgtttgggcgctggtagtccaacacttctgtttttctgtcttccgatttatctcttctctct |
7795482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 476 - 715
Target Start/End: Complemental strand, 42446669 - 42446430
Alignment:
| Q |
476 |
aaggtaatttcttaataaccataatcatatacctcttgctgaaaaccagaaaacacaatcaattacttattcctcc-atcgcatgaatgatttccttgta |
574 |
Q |
| |
|
|||||||| ||| || ||||| |||||||||||||||| ||||||| |||||| ||||| ||||| |||||||||| || | | ||||| |||||||||| |
|
|
| T |
42446669 |
aaggtaatatctcaagaaccacaatcatatacctcttggtgaaaacaagaaaa-acaattaattaattattcctccaattggaagaatgttttccttgta |
42446571 |
T |
|
| Q |
575 |
tataattatctgagttgaaatatcccttgctttatagccaagctcttcaatcatttgggtacttagatcaaaccatgctaattctttgtcttttctttgg |
674 |
Q |
| |
|
||| |||| | ||| | | | ||| | ||||||| |||||| | |||||||| | |||||||| ||||| ||| |||| |||| |||||||| | |
|
|
| T |
42446570 |
tattattacccgagcagtaggaccccctcctttataaccaagcccctcaatcatcttggtacttaaatcaagccaagctagttctccatcttttctaatg |
42446471 |
T |
|
| Q |
675 |
aagaaaatttcccctttcgtccctactccaataggacgctc |
715 |
Q |
| |
|
||||| ||||| |||||| |||| ||| | ||||||||||| |
|
|
| T |
42446470 |
aagaatatttctcctttcatccccacttcgataggacgctc |
42446430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 7795494 - 7795448
Alignment:
| Q |
204 |
atctcttctctatgtaagtggttatattgcacaaaaaagaattaaga |
250 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7795494 |
atctcttctctctgtaagtggttatattgcacaaaaaagaattaaga |
7795448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 7802535 - 7802607
Alignment:
| Q |
29 |
gagagtccctgcaaccatatccagccaaagcagtgtcaccgtctctccattgtgttgtgtcattcgggaataa |
101 |
Q |
| |
|
|||| |||||||||||| | ||||||||||||| | |||| ||||||||||||||||| | ||| |||||||| |
|
|
| T |
7802535 |
gagattccctgcaaccacagccagccaaagcagcgccaccatctctccattgtgttgtataatttgggaataa |
7802607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 127; Significance: 4e-65; HSPs: 2)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 330 - 790
Target Start/End: Original strand, 33064 - 33527
Alignment:
| Q |
330 |
ttcttttcaatgatttcaaaatca-attagtttgcaaataaaaagagactaaacattnnnnnnnnnntt-ataaatcaagatcaaatgatttcataattt |
427 |
Q |
| |
|
||||| |||||||||| ||||||| || |||| ||||||| |||||||||||||||| || ||||| ||| ||||| |||||||||||||| |
|
|
| T |
33064 |
ttcttgtcaatgatttgaaaatcatatcagttagcaaatagaaagagactaaacattcaaaagaaagttgataaagcaatatcaattgatttcataattt |
33163 |
T |
|
| Q |
428 |
agttccaaataatttttatatgcataattgactagtcatttttcacaaaaggtaatt-tcttaataaccataatcatatacctcttgctgaaaaccagaa |
526 |
Q |
| |
|
| || ||||||| | ||||||| |||| ||| || ||| |||| |||||||| ||| |||||||| |||||||||||||||| ||||||| ||| |
|
|
| T |
33164 |
atttgacaataattgtgatatgcacaattttatagccactttgcacacaaggtaataatctcaataaccacaatcatatacctcttggtgaaaacatgaa |
33263 |
T |
|
| Q |
527 |
aacacaatcaattacttattcctcca-tcgcatgaatgatttccttgtatataattatctgagttgaaatatcccttgctttatagccaagctcttcaat |
625 |
Q |
| |
|
|| | ||| |||||||||||||| || | ||| ||||| |||||||||||| |||| |||| || | ||||||||||||| |||||||||||||| |
|
|
| T |
33264 |
aa-ataattaattacttattccttcaatggcaagaatgttttccttgtatagtgatatccgagtataaggaccccttgctttataaccaagctcttcaat |
33362 |
T |
|
| Q |
626 |
catttgggtacttagatcaaaccatgctaattctttgtcttttctttggaagaaaatttcccctttcgtccctactccaataggacgctcgatgaaagaa |
725 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||| |||| ||||||||||| | | |||| |
|
|
| T |
33363 |
cacttgggtacttagatcaaaccaagctaattcattatctttcctttggaagaaaatttcccctttcgtccccactctgataggacgctcaacgcaagac |
33462 |
T |
|
| Q |
726 |
aatggtccaacgatgaagagtttagtccacgatcccttcacaccgagttcatccaaaatggctat |
790 |
Q |
| |
|
|| |||||||| |||||||||| ||||||||| |||| | ||||||||| ||||||| ||||| |
|
|
| T |
33463 |
aacggtccaacagtgaagagtttggtccacgattccttaatgccgagttcacccaaaattgctat |
33527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 471 - 790
Target Start/End: Original strand, 39558 - 39878
Alignment:
| Q |
471 |
cacaaaaggtaat-ttcttaataaccataatcatatacctcttgctgaaaaccagaaaacacaatcaattacttattcctcca-tcgcatgaatgatttc |
568 |
Q |
| |
|
|||| |||||||| |||| |||||||| ||||||||||||||| ||||||| |||||| | ||| |||||||||||||| || | || ||||| |||| |
|
|
| T |
39558 |
cacacaaggtaatattctcaataaccacgatcatatacctcttggtgaaaacaagaaaa-ataattaattacttattccttcaattacaagaatgttttc |
39656 |
T |
|
| Q |
569 |
cttgtatataattatctgagttgaaatatcccttgctttatagccaagctcttcaatcatttgggtacttagatcaaaccatgctaattctttgtctttt |
668 |
Q |
| |
|
|||||||| |||| |||| || | ||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| || |||||| |
|
|
| T |
39657 |
cttgtatagtgatatccgagtataaggaccccttgctttataaccaagctcttcaatcacttgggtacttagatcaaaccaagctaattcattatctttt |
39756 |
T |
|
| Q |
669 |
ctttggaagaaaatttcccctttcgtccctactccaataggacgctcgatgaaagaaaatggtccaacgatgaagagtttagtccacgatcccttcacac |
768 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| ||||||||||| | | |||| || |||||||| | |||||||| |||||||| |||| | | |
|
|
| T |
39757 |
ctttggaagaaaatttccccttttgtccccactccgataggacgctcaacgcaagacaacggtccaacagtaaagagtttgatccacgattccttaatgc |
39856 |
T |
|
| Q |
769 |
cgagttcatccaaaatggctat |
790 |
Q |
| |
|
|||||||| ||||||| ||||| |
|
|
| T |
39857 |
cgagttcacccaaaattgctat |
39878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 2e-42; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 398 - 765
Target Start/End: Complemental strand, 29145706 - 29145339
Alignment:
| Q |
398 |
ataaatcaagatcaaatgatttcataatttagttccaaataatttttatatgcataattgactagtcatttttcacaaaaggtaatttcttaataaccat |
497 |
Q |
| |
|
||||| ||||||||| ||||||||||||||| || ||||||| | ||||||| ||||||| | || ||| || |||| ||||| ||| || ||||| |
|
|
| T |
29145706 |
ataaagcaagatcaattgatttcataatttacttgacaataattgtgatatgcacaattgacaaaccagtttgcataaaatgtaatatctcaacaaccac |
29145607 |
T |
|
| Q |
498 |
aatcatatacctcttgctgaaaaccagaaaacacaatcaattacttattcctcca-tcgcatgaatgatttccttgtatataattatctgagttgaaata |
596 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||| ||||| | ||||| ||||||| | | | ||||| |||||||||||| ||||| |||| ||| | |
|
|
| T |
29145606 |
aatcatatacctcttggtgataacaagaaaa-acaattagctacttgctcctccaattggaagaatgtattccttgtatattattattcgagtagaacaa |
29145508 |
T |
|
| Q |
597 |
tcccttgctttatagccaagctcttcaatcatttgggtacttagatcaaaccatgctaattctttgtcttttctttggaagaaaatttcccctttcgtcc |
696 |
Q |
| |
|
|||| |||||||| ||||| || |||||| |||||||||||||||||||||| ||||||||| |||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
29145507 |
cccctagctttataaccaagttcctcaatcttttgggtacttagatcaaaccagactaattcttcgtcttttctttgaaagaatatttccccttttatcc |
29145408 |
T |
|
| Q |
697 |
ctactccaataggacgctcgatgaaagaaaatggtccaacgatgaagagtttagtccacgatcccttca |
765 |
Q |
| |
|
| ||||| |||||| ||| ||| |||| | |||||||| || |||||||| ||||| ||| |||||| |
|
|
| T |
29145407 |
caactccgataggatgcttaatgcaagatagtggtccaagaataaagagtttggtccatgattccttca |
29145339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 601 - 771
Target Start/End: Complemental strand, 29013039 - 29012869
Alignment:
| Q |
601 |
ttgctttatagccaagctcttcaatcatttgggtacttagatcaaaccatgctaattctttgtcttttctttggaagaaaatttcccctttcgtccctac |
700 |
Q |
| |
|
|||||||||| |||| ||| ||||||||||||||||| | ||||| ||| ||| ||||| |||||||| |||||| ||||| ||||||||||| || |
|
|
| T |
29013039 |
ttgctttataaccaacctcctcaatcatttgggtactcaaatcaagccaaactagttcttcatcttttctgatgaagaatatttctcctttcgtccccac |
29012940 |
T |
|
| Q |
701 |
tccaataggacgctcgatgaaagaaaatggtccaacgatgaagagtttagtccacgatcccttcacaccga |
771 |
Q |
| |
|
||| |||||||||| | | |||| || |||||||| ||||||||||| ||||| ||| |||||||||||| |
|
|
| T |
29012939 |
tccgataggacgcttaacgcaagacaacggtccaacaatgaagagtttggtccatgattccttcacaccga |
29012869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 607 - 758
Target Start/End: Original strand, 29152006 - 29152157
Alignment:
| Q |
607 |
tatagccaagctcttcaatcatttgggtacttagatcaaaccatgctaattctttgtcttttctttggaagaaaatttcccctttcgtccctactccaat |
706 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||| ||||||||||| |||| |||||| ||||||||| ||||| |||||||| || |||| ||||| || |
|
|
| T |
29152006 |
tataaccaagctcctcaatcatttgagtactcagatcaaaccaagctacttctttatcttttcttataaagaatatttccccatttttccccactccgat |
29152105 |
T |
|
| Q |
707 |
aggacgctcgatgaaagaaaatggtccaacgatgaagagtttagtccacgat |
758 |
Q |
| |
|
||||||||| | | ||| || |||||||| ||||||||||| |||||||| |
|
|
| T |
29152106 |
aggacgctcaacgtaaggcaacggtccaaccatgaagagtttgatccacgat |
29152157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 607 - 784
Target Start/End: Complemental strand, 34282119 - 34281942
Alignment:
| Q |
607 |
tatagccaagctcttcaatcatttgggtacttagatcaaaccatgctaattctttgtcttttctttggaagaaaatttcccctttcgtccctactccaat |
706 |
Q |
| |
|
|||| |||||| | ||||||||||||||||| | ||||||||| || | |||||| ||||||||| |||||| |||||||| || ||||| ||||| || |
|
|
| T |
34282119 |
tataaccaagcacgtcaatcatttgggtactcaaatcaaaccaagccacttctttatcttttcttatgaagaatatttccccctttgtccccactccgat |
34282020 |
T |
|
| Q |
707 |
aggacgctcgatgaaagaaaatggtccaacgatgaagagtttagtccacgatcccttcacaccgagttcatccaaaat |
784 |
Q |
| |
|
||||||||| | | ||| || |||||||| || |||||||| |||||||| | || | |||||||| | ||||||| |
|
|
| T |
34282019 |
aggacgctcaacgtaaggcaacggtccaaccataaagagtttgatccacgattctttgaaaccgagttgacccaaaat |
34281942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 612 - 712
Target Start/End: Complemental strand, 29124344 - 29124244
Alignment:
| Q |
612 |
ccaagctcttcaatcatttgggtacttagatcaaaccatgctaattctttgtcttttctttggaagaaaatttcccctttcgtccctactccaataggac |
711 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||||||||| |||| |||||| |||||||| |||||| |||||||| ||| | || ||||||||||||| |
|
|
| T |
29124344 |
ccaagctcctcaatcatttgggtactcaaatcaaaccaagctagttctttatcttttctaatgaagaatatttcccccttcatacccactccaataggac |
29124245 |
T |
|
| Q |
712 |
g |
712 |
Q |
| |
|
| |
|
|
| T |
29124244 |
g |
29124244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 612 - 784
Target Start/End: Original strand, 32740596 - 32740768
Alignment:
| Q |
612 |
ccaagctcttcaatcatttgggtacttagatcaaaccatgctaattctttgtcttttctttggaagaaaatttcccctttcgtccctactccaataggac |
711 |
Q |
| |
|
|||||||| ||||| |||| |||| || ||||| ||| ||| ||||| ||||||||| ||||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
32740596 |
ccaagctccgcaatcctttgtgtacataaatcaagccaaactagttcttcatcttttcttaggaagaatatttctcctttcgtccccactccaataggac |
32740695 |
T |
|
| Q |
712 |
gctcgatgaaagaaaatggtccaacgatgaagagtttagtccacgatcccttcacaccgagttcatccaaaat |
784 |
Q |
| |
|
| | | ||| ||||||||||| ||||||||||| ||||||||| |||| | |||| |||| ||||||| |
|
|
| T |
32740696 |
gttgaacaccagacaatggtccaacaatgaagagtttggtccacgattcctttatgccgaattcacccaaaat |
32740768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 612 - 715
Target Start/End: Complemental strand, 29137478 - 29137375
Alignment:
| Q |
612 |
ccaagctcttcaatcatttgggtacttagatcaaaccatgctaattctttgtcttttctttggaagaaaatttcccctttcgtccctactccaataggac |
711 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||||| |||| |||||| ||||||||| ||| | |||||||| || ||||| ||||||| ||||| |
|
|
| T |
29137478 |
ccaagctcctcgatcatttgggtacttaaatcaaaccaagctagttctttatcttttcttgtaaaggatatttccccctttgtccccactccaaaaggac |
29137379 |
T |
|
| Q |
712 |
gctc |
715 |
Q |
| |
|
|||| |
|
|
| T |
29137378 |
gctc |
29137375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 628 - 758
Target Start/End: Complemental strand, 29131488 - 29131358
Alignment:
| Q |
628 |
tttgggtacttagatcaaaccatgctaattctttgtcttttctttggaagaaaatttcccctttcgtccctactccaataggacgctcgatgaaagaaaa |
727 |
Q |
| |
|
|||| ||||||| ||||| ||| ||| ||||| ||||||||| ||||||| ||||| ||||| ||||| ||||||||||||||||| | | ||| || |
|
|
| T |
29131488 |
tttgcgtacttaaatcaagccaaactagttcttcatcttttcttaggaagaatatttctccttttgtccccactccaataggacgctcaacgccagacaa |
29131389 |
T |
|
| Q |
728 |
tggtccaacgatgaagagtttagtccacgat |
758 |
Q |
| |
|
||||||||| ||||||| || ||||||||| |
|
|
| T |
29131388 |
tggtccaacaatgaagatcttggtccacgat |
29131358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 622 - 784
Target Start/End: Original strand, 32960625 - 32960787
Alignment:
| Q |
622 |
caatcatttgggtacttagatcaaaccatgctaattctttgtcttttctttggaagaaaatttcccctttcgtccctactccaataggacgctcgatgaa |
721 |
Q |
| |
|
||||||||||||||| | ||||||| | ||||||||| ||||||||| |||||| |||||||| ||| |||| ||||| ||||||||||| | | |
|
|
| T |
32960625 |
caatcatttgggtacccaaatcaaacaaaactaattcttcatcttttcttatgaagaatatttcccccttcttccccactcccataggacgctcaacaca |
32960724 |
T |
|
| Q |
722 |
agaaaatggtccaacgatgaagagtttagtccacgatcccttcacaccgagttcatccaaaat |
784 |
Q |
| |
|
|| ||||||| ||| || |||||||| |||| ||| |||||| ||||| |||||||||||| |
|
|
| T |
32960725 |
aggcaatggtctaacaataaagagtttgatccaagattccttcataccgatttcatccaaaat |
32960787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 602 - 748
Target Start/End: Original strand, 34278319 - 34278465
Alignment:
| Q |
602 |
tgctttatagccaagctcttcaatcatttgggtacttagatcaaaccatgctaattctttgtcttttctttggaagaaaatttcccctttcgtccctact |
701 |
Q |
| |
|
|||| |||| |||||||| |||||||| ||| |||| | ||||||||| |||| |||||| |||||| || |||||| |||| ||| || ||||| ||| |
|
|
| T |
34278319 |
tgctctataaccaagctcctcaatcatatggatactcaaatcaaaccaagctacttctttatcttttattatgaagaatattttcccctttgtccccact |
34278418 |
T |
|
| Q |
702 |
ccaataggacgctcgatgaaagaaaatggtccaacgatgaagagttt |
748 |
Q |
| |
|
|| ||||||||||| | | ||| || |||||||| ||||||||||| |
|
|
| T |
34278419 |
ccgataggacgctcaacgtaaggcaacggtccaaccatgaagagttt |
34278465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 612 - 709
Target Start/End: Original strand, 32744742 - 32744839
Alignment:
| Q |
612 |
ccaagctcttcaatcatttgggtacttagatcaaaccatgctaattctttgtcttttctttggaagaaaatttcccctttcgtccctactccaatagg |
709 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||||||||| || | ||||| || |||||| |||||| |||||||| || || || ||||||||||| |
|
|
| T |
32744742 |
ccaagctcctcaatcatttgggtactcaaatcaaaccaagccagttcttcatcgtttcttatgaagaatatttccccctttgtacccactccaatagg |
32744839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 784
Target Start/End: Complemental strand, 29300283 - 29300102
Alignment:
| Q |
603 |
gctttatagccaagctcttcaatcatttgggtacttagatcaaaccatgctaattctttgtcttttctttggaagaaaatttcccctttcgtccctactc |
702 |
Q |
| |
|
|||||||| ||||||| ||||||||||| ||||| ||||||||||| |||| ||| | |||||| || ||||| |||||||| || ||||| | | |
|
|
| T |
29300283 |
gctttataaccaagctgctcaatcatttgcgtactcagatcaaaccaagctacttccatatctttttttataaagaatatttccccctttgtccccatta |
29300184 |
T |
|
| Q |
703 |
caataggacgctcgatgaaagaaaatggtccaacgatgaagagtttagtccacgatcccttcacaccgagttcatccaaaat |
784 |
Q |
| |
|
|||||||||| || | ||| || |||||||| ||||||| || ||||||||| |||| | || ||| ||| ||||||| |
|
|
| T |
29300183 |
tgataggacgctggacgcaagccaacggtccaacattgaagagattggtccacgattcctttatactgagctcacccaaaat |
29300102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 476 - 711
Target Start/End: Original strand, 15976 - 16206
Alignment:
| Q |
476 |
aaggtaatttcttaataaccataatcatatacctcttgctgaaaaccagaaaacacaatcaattacttattcctccatc-gcatgaatgatttccttgta |
574 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||| || || ||||| | ||||| |||||||||||| | | ||||| || ||||||| |
|
|
| T |
15976 |
aaggtaatatctcaataaccataatcatatacctcttggagataaaaagaaa------ttaattaactattcctccatctgtaagaatgtttaccttgta |
16069 |
T |
|
| Q |
575 |
tataattatctgagttgaaatatcccttgctttatagccaagctcttcaatcatttgggtacttagatcaaaccatgctaattctttgtcttttctttgg |
674 |
Q |
| |
|
||| |||||| ||| || ||||| ||||||||| ||||| || ||||||||||| ||| | ||||||||||| |||||||||| || ||||||||| |
|
|
| T |
16070 |
tattattatccgagcacaacaatcccctgctttataaccaagttcctcaatcatttgagtattaagatcaaaccaagctaattcttcatcctttctttgg |
16169 |
T |
|
| Q |
675 |
aagaaaatttcccctttcgtccctactccaataggac |
711 |
Q |
| |
|
||||| | ||||||||| ||||| ||||| ||||||| |
|
|
| T |
16170 |
aagaataattccccttttgtccccactccgataggac |
16206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0613 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0613
Description:
Target: scaffold0613; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 476 - 735
Target Start/End: Complemental strand, 523 - 270
Alignment:
| Q |
476 |
aaggtaatttcttaataaccataatcatatacctcttgctgaaaaccagaaaacacaatcaattacttattcctccatcg-catgaatgatttccttgta |
574 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||| ||||| ||||| | |||||| ||||||||||| || ||||| |||||||||| |
|
|
| T |
523 |
aaggtaatatctcaataaccataatcatatacctcttggagaaaat-agaaa------ttaattacctattcctccattttcaagaatgttttccttgta |
431 |
T |
|
| Q |
575 |
tataattatctgagttgaaatatcccttgctttatagccaagctcttcaatcatttgggtacttagatcaaaccatgctaattctttgtcttttctttgg |
674 |
Q |
| |
|
||| |||||| |||| | ||||| ||||||||| ||||| || ||||||||||| ||| ||||||||||| |||||||||| || ||||||||| |
|
|
| T |
430 |
tattattatccgagtacgacaatcccctgctttataaccaagttcctcaatcatttgagtatgaagatcaaaccaagctaattcttcatcctttctttgg |
331 |
T |
|
| Q |
675 |
aagaaaatttcccctttcgtccctactccaataggacgctcgatgaaagaaaatggtccaa |
735 |
Q |
| |
|
||||| | ||||||||| |||| ||||| |||||| ||| | | |||| |||||||||| |
|
|
| T |
330 |
aagaataattccccttttttccccactccgataggaaactcaacgcaagacaatggtccaa |
270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 6e-21; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 612 - 784
Target Start/End: Original strand, 54294962 - 54295134
Alignment:
| Q |
612 |
ccaagctcttcaatcatttgggtacttagatcaaaccatgctaattctttgtcttttctttggaagaaaatttcccctttcgtccctactccaataggac |
711 |
Q |
| |
|
|||||||| |||||||||||| ||| | ||||||| | |||| |||||| ||||||||| |||||| |||||||| |||||||| ||||| |||||| |
|
|
| T |
54294962 |
ccaagctcctcaatcatttggctacacaaatcaaacaaagctacttctttatcttttcttacgaagaatatttcccccttcgtccccactccgataggat |
54295061 |
T |
|
| Q |
712 |
gctcgatgaaagaaaatggtccaacgatgaagagtttagtccacgatcccttcacaccgagttcatccaaaat |
784 |
Q |
| |
|
|||| | |||| || |||||||| ||||| ||||| ||||||||| | ||||||||| |||| ||||||| |
|
|
| T |
54295062 |
gctcaacataagacaacggtccaacaatgaaaagtttggtccacgattctatcacaccgaattcacccaaaat |
54295134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 613 - 754
Target Start/End: Original strand, 9581865 - 9582006
Alignment:
| Q |
613 |
caagctcttcaatcatttgggtacttagatcaaaccatgctaattctttgtcttttctttggaagaaaatttcccctttcgtccctactccaataggacg |
712 |
Q |
| |
|
||||||| |||||||||| ||||||| ||||| || ||| |||||| |||| ||| || ||| ||||| |||||||| || |||||||||||||| |
|
|
| T |
9581865 |
caagctccacaatcatttgagtacttaaatcaagacaaactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccaataggacg |
9581964 |
T |
|
| Q |
713 |
ctcgatgaaagaaaatggtccaacgatgaagagtttagtcca |
754 |
Q |
| |
|
||| ||| |||| || |||||||| ||||||||||| ||||| |
|
|
| T |
9581965 |
ctcaatgcaagacaacggtccaaccatgaagagtttggtcca |
9582006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 613 - 754
Target Start/End: Original strand, 9587560 - 9587701
Alignment:
| Q |
613 |
caagctcttcaatcatttgggtacttagatcaaaccatgctaattctttgtcttttctttggaagaaaatttcccctttcgtccctactccaataggacg |
712 |
Q |
| |
|
||||||| |||||||||| ||||||| ||||| || ||| |||||| |||| ||| || ||| ||||| |||||||| || |||||||||||||| |
|
|
| T |
9587560 |
caagctccacaatcatttgagtacttaaatcaagacaaactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccaataggacg |
9587659 |
T |
|
| Q |
713 |
ctcgatgaaagaaaatggtccaacgatgaagagtttagtcca |
754 |
Q |
| |
|
||| ||| |||| || |||||||| ||||||||||| ||||| |
|
|
| T |
9587660 |
ctcaatgcaagacaacggtccaaccatgaagagtttggtcca |
9587701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 613 - 763
Target Start/End: Complemental strand, 9569387 - 9569237
Alignment:
| Q |
613 |
caagctcttcaatcatttgggtacttagatcaaaccatgctaattctttgtcttttctttggaagaaaatttcccctttcgtccctactccaataggacg |
712 |
Q |
| |
|
||||||| |||||||||| ||||||| ||||| || ||| ||||| |||||||| || ||| ||||| ||||| ||||| ||||| |||||||| |
|
|
| T |
9569387 |
caagctccacaatcatttgagtacttaaatcaatacaaactagctctttatcttttctgatgacgaatatttctccttttgtccccactccgataggacg |
9569288 |
T |
|
| Q |
713 |
ctcgatgaaagaaaatggtccaacgatgaagagtttagtccacgatccctt |
763 |
Q |
| |
|
||| ||| |||| || |||||||| | ||||||||| ||||||||| |||| |
|
|
| T |
9569287 |
ctcaatgcaagacaacggtccaacaaggaagagtttggtccacgattcctt |
9569237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 729 - 776
Target Start/End: Original strand, 48741982 - 48742029
Alignment:
| Q |
729 |
ggtccaacgatgaagagtttagtccacgatcccttcacaccgagttca |
776 |
Q |
| |
|
||||||| ||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
48741982 |
ggtccaaaaatgaagagtttagtccaagattccttcacaccgagttca |
48742029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University