View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_71 (Length: 365)
Name: NF8921_low_71
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 8 - 351
Target Start/End: Complemental strand, 36677446 - 36677102
Alignment:
| Q |
8 |
atggacatcaaactcctccaacatatgacatttctgaattccctctttctctagtggtgttgttgaaggataattatgcacatgtagatttcattgcggc |
107 |
Q |
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| T |
36677446 |
atggacatcaaactcctccaacatatgacatttccgaactccctctttctctagtggtgttgttgaaggataattatgcacatgtagatttcattgcggc |
36677347 |
T |
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| Q |
108 |
tatcaatgctaaacaagtcgtttatgatcctattattttacaattattattgtgcttcaaatatatctactatctatctattaataatatcggtcttgtt |
207 |
Q |
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| T |
36677346 |
tgtcaatgctaaacaagtcgtttatgatcctatgattttacaattattattgtgcttcaaatatatctactatctatctattaataatatcggtcttgtt |
36677247 |
T |
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| Q |
208 |
aacccgtgcacccagttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgctttt-aagatgatatttcaagttacgattcg |
306 |
Q |
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| T |
36677246 |
aacccgtgcacccagttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgcttttaaagatgatatttcaagttacgattcg |
36677147 |
T |
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| Q |
307 |
caaatgatgtaatgtaatggaaaattcaaatgaataagtgatgtc |
351 |
Q |
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| T |
36677146 |
caaatgatgtaatgtaatggaaaattcaaatgaataagtgatgtc |
36677102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 8 - 351
Target Start/End: Complemental strand, 36687528 - 36687184
Alignment:
| Q |
8 |
atggacatcaaactcctccaacatatgacatttctgaattccctctttctctagtggtgttgttgaaggataattatgcacatgtagatttcattgcggc |
107 |
Q |
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| T |
36687528 |
atggacatcaaactcctccaacatatgacatttccgaactccctctttctctagtggtgttgttgaaggataattatgcacatgtagatttcattgcggc |
36687429 |
T |
|
| Q |
108 |
tatcaatgctaaacaagtcgtttatgatcctattattttacaattattattgtgcttcaaatatatctactatctatctattaataatatcggtcttgtt |
207 |
Q |
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| T |
36687428 |
tgtcaatgctaaacaagtcgtttatgatcctatgattttacaattattattgtgcttcaaatatatctactatctatctattaataatatcggtcttgtt |
36687329 |
T |
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| Q |
208 |
aacccgtgcacccagttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgctttt-aagatgatatttcaagttacgattcg |
306 |
Q |
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| T |
36687328 |
aacccgtgcacccagttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgcttttaaagatgatatttcaagttacgattcg |
36687229 |
T |
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| Q |
307 |
caaatgatgtaatgtaatggaaaattcaaatgaataagtgatgtc |
351 |
Q |
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| T |
36687228 |
caaatgatgtaatgtaatggaaaattcaaatgaataagtgatgtc |
36687184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 222 - 344
Target Start/End: Original strand, 36665304 - 36665431
Alignment:
| Q |
222 |
gttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgctt-ttaagatgatatttcaagttacgattcgcaa--atg--atgt |
316 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||| |||||| | ||||| ||||||||||| ||||||| ||| ||| |||| |
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| T |
36665304 |
gttagtggttattatgtttaagtaaattgtatatggaatcttagattttgagtgcttctaaagatcatatttcaagtcacgattcacaatgatgtaatgt |
36665403 |
T |
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| Q |
317 |
aatgtaatggaaaattcaaatgaataag |
344 |
Q |
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| T |
36665404 |
aatgtaatggaaaattcaaatgaataag |
36665431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 36664849 - 36664931
Alignment:
| Q |
58 |
ctagtggtgttgttgaaggataattatgcacatgtagatttcattgcggctatcaatgctaaacaagtcgtttatgatcctat |
140 |
Q |
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| T |
36664849 |
ctagtggtgtcgttgaacgataattatgcacatttagatttcattgcggctatcaatgctaaacaactcatttatgatcctat |
36664931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 36704438 - 36704362
Alignment:
| Q |
61 |
gtggtgttgttgaaggataattatgcacatgtagatttcattgcggctatcaatgctaaacaagtcgtttatgatcc |
137 |
Q |
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| T |
36704438 |
gtggtattgttcaaggatgattatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcc |
36704362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 36664986 - 36665022
Alignment:
| Q |
142 |
attttacaattattattgtgcttcaaatatatctact |
178 |
Q |
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| T |
36664986 |
attttacaactattattgtgcttcgaatatatctact |
36665022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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