View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_72 (Length: 357)
Name: NF8921_low_72
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_72 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 49126185 - 49126426
Alignment:
| Q |
2 |
gtagccaactccatcagccagagagtctgtgtaaaagctacaaaatcttagttgtctgttacatgcgtttagatgttccaagcaaggatttcttatatca |
101 |
Q |
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| T |
49126185 |
gtagccaacttcgtcagtcagagagtctgtgtaaaagctacaaaatcttagttgtctgttacatgcgtttagatgttccaagcaaggatttcttatatca |
49126284 |
T |
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| Q |
102 |
aaattcagtagctgttacataggctttttgacagacggagttagcgataaggtccaaaactgaaacattttcataaatgagaaacccaaatgtga---gn |
198 |
Q |
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| T |
49126285 |
aaattcagtagctgttacataggctttttgacagacggagttagctataaggtccaaaactgaaacattttcataaatgagaaacccaaatgtgaaagaa |
49126384 |
T |
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| Q |
199 |
nnnnnnntgaaaattatcatattttgagggacaacagacata |
240 |
Q |
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| T |
49126385 |
aaaaaaatgaaaattatcatattttgagggacaacggacata |
49126426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 254 - 339
Target Start/End: Complemental strand, 49125782 - 49125698
Alignment:
| Q |
254 |
caggttctgcatattgaattgaaattgaaataaagaacatgtccaacctttatttaaatattaaaatgtagtaaatagaatgcaag |
339 |
Q |
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| T |
49125782 |
caggtcctgcatattgaattgaaattgaaataaagaacatgtccaacc-ttatttaaatattaaaatgtagtaaatagaatgcaag |
49125698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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