View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_73 (Length: 354)
Name: NF8921_low_73
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_73 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 335
Target Start/End: Complemental strand, 55943264 - 55942943
Alignment:
| Q |
14 |
ggtgttgcataggtattcaatgtatcttcctaattgttactatatgtaaataaatgaaaggataaagcatcaaaattgatagcttttaagatgaattatg |
113 |
Q |
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| T |
55943264 |
ggtgttgcataggtattcaatgtatcttactaattgttactatatgtaaataaatgaaaggataaagcataaaaattgatagcttttaagatgaattatg |
55943165 |
T |
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| Q |
114 |
agagattatttacttggatcgagatcactggttattgcagcagagttgaaatagcaagatcctcctttgtgcttgaacttctgatagtaattgttgaaga |
213 |
Q |
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| T |
55943164 |
agagattatttacttggatcgagatcactggttattgcagcagagttgaaatagcaagatcctcctttgtgcttgaacttctgatagtaattgttgaaga |
55943065 |
T |
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| Q |
214 |
cataggaagcatgatccttcatggtatttggaaggtaacatggatgattaacttgtatattgctgcaatttgctccacccacatgacaagcccaatccat |
313 |
Q |
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| T |
55943064 |
cataggaagcatgatccttcatggtatttggaaggtaacatggatgattaacttgtatattgctgcaatttgctccacccacatgacaagcccaatccat |
55942965 |
T |
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| Q |
314 |
agccctctgcagatcatcatct |
335 |
Q |
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| T |
55942964 |
agccctctgcagatcatcatct |
55942943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 113 - 325
Target Start/End: Complemental strand, 55946527 - 55946315
Alignment:
| Q |
113 |
gagagattatttacttggatcgagatcactggttattgcagcagagttgaaatagcaagatcctcctttgtgcttgaacttctgatagtaattgttgaag |
212 |
Q |
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| T |
55946527 |
gagagataatttacttgggtcagaagcacttgttattgcagcatagttgaaatagcaagagcctcccttgtgcttgtacttctgatagtaatcgttgaag |
55946428 |
T |
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| Q |
213 |
acataggaagcatgatccttcatggtatttggaaggtaacatggatgattaacttgtatattgctgcaatttgctccacccacatgacaagcccaatcca |
312 |
Q |
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| T |
55946427 |
gcataggaagcatgatccttcacagtatttggaaggtaacaaggttggttcacttgtatcttgctgcaatctactccatccacatgacaagcgtaatcca |
55946328 |
T |
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| Q |
313 |
tagccctctgcag |
325 |
Q |
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| T |
55946327 |
tggccctctgcag |
55946315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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