View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_74 (Length: 352)
Name: NF8921_low_74
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_74 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 47900246 - 47900565
Alignment:
| Q |
17 |
tgtgaaccatagaaaaatatacagatcagaaaactctaacacaacaaaatctacacagtttgaaacaaaagctgcaacagatccaaaacacaaggaagtg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
47900246 |
tgtgaaccatagaaaaatatacagatcagaaaactctaacacaacaaaatctacacagtttaaaacaaaagctgcaacagatccaaaacagaaggaagtg |
47900345 |
T |
|
| Q |
117 |
tgattaaagtaccttgtattcatcaccgaattcaatttgaaaagcatcacgaatagcctcagcagaagctctatgtccaccaccagtatcactcatgaga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47900346 |
tgattaaagtaccttgtattcatcaccgaattcaatttgaaaagcatcacgaatagcctcagcagaagctctatgtccaccaccagtatcactcatgaga |
47900445 |
T |
|
| Q |
217 |
atcaacacattttttgttctttctgctccaatttccatgagttccatgccaacttcattatcttcattgatagaactttgagactcactacgtttcttga |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47900446 |
atcaacacattttttgttctttctgctccaatttccatgagttccatgccaccttcattatcttcattgatagaactttgagactcactacgtttcttga |
47900545 |
T |
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| Q |
317 |
agcttccactgcctttaatg |
336 |
Q |
| |
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|||||||||||||||||||| |
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| T |
47900546 |
agcttccactgcctttaatg |
47900565 |
T |
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