View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_79 (Length: 342)
Name: NF8921_low_79
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_79 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 51225121 - 51225315
Alignment:
| Q |
1 |
tttctggctactcattttgtttctttttcttctctgtttgaggatcaggaaggaacttgtgtgttttgagtttcaatttaaaaggtaagaagacggagat |
100 |
Q |
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| T |
51225121 |
tttctggctactcattttgtttctttttcttctctgtttgaggatcaggaaggaacttgtgtgttttgagtttcaatttaaaaggtaagaagacggagat |
51225220 |
T |
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| Q |
101 |
tcctttgcaacaagaagcttaggaatgtccaaactgttaccaaaaccattagaacaatttgaaatttttgtgttgtgaaattataacaagacatg |
195 |
Q |
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| T |
51225221 |
tcctttgcaacaagaagcttaggaatgtccaaactgttaccaaaaccattagaacaatttgaaattcttgtgttgtgacattataacaagacatg |
51225315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 243 - 330
Target Start/End: Original strand, 51225353 - 51225437
Alignment:
| Q |
243 |
ttcgacatattcaatgaatttaatccttatcacaggttgttgaatttttcaatatcaacaacaaaatacaacttgcatattaatatat |
330 |
Q |
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| T |
51225353 |
ttcgacatattcaatgaatttaatccttatcacaggttgttgaatttttc---atcaacaacaaaatacaacttgcatattaatatat |
51225437 |
T |
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