View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_80 (Length: 342)
Name: NF8921_low_80
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_80 |
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Alignment Details
Target: chr6 (Bit Score: 99; Significance: 8e-49; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 183 - 285
Target Start/End: Complemental strand, 4368701 - 4368599
Alignment:
| Q |
183 |
tttttattttgaaagcattctagattaaagatctagaatttgactccttgttttgggtgtttacatcataccacttgttaaaagcttaatattatagctt |
282 |
Q |
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| T |
4368701 |
tttttattttgaaagcattctagattaaagatctagaatttgactccttgttttgggtgtttacatcataccacttgtgaaaagcttaatattatagctt |
4368602 |
T |
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| Q |
283 |
aag |
285 |
Q |
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||| |
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| T |
4368601 |
aag |
4368599 |
T |
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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 255 - 342
Target Start/End: Complemental strand, 4388491 - 4388404
Alignment:
| Q |
255 |
acttgttaaaagcttaatattatagcttaaggcatgtatttgtgatttatgaattgtggtttgatttcttatgggttttgagttaagt |
342 |
Q |
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| T |
4388491 |
acttgttaaaagcttaatactatagcttaaggtatgaatttgtgacttatgaattgtgtttggctttcttatgggttttgagttaagt |
4388404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 4368871 - 4368795
Alignment:
| Q |
17 |
aggtttaaatgtggacgactcagatttggatgtaacatgtctgtgcaatgtctagctgatgcgggaattgctgatttgc |
95 |
Q |
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| T |
4368871 |
aggtttaaatgtggacgactcagatttggatgtaccatgtc--tacaatgtcaagctgatgcgggaattgctgatttgc |
4368795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 207 - 273
Target Start/End: Complemental strand, 4364287 - 4364221
Alignment:
| Q |
207 |
ttaaagatctagaatttgactccttgttttgggtgtttacatcataccacttgttaaaagcttaata |
273 |
Q |
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| T |
4364287 |
ttaaatatctagtatttgactccttgttttgggtgtttgcatcttgccacttgttaaaagcttaata |
4364221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 4358917 - 4358834
Alignment:
| Q |
203 |
tagattaaagatctagaatttgactccttgttttgggtgtttacatcataccacttgttaaaagctt-aatattatagcttaag |
285 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| | | | |||||| ||||||||| |||| ||||||||||| |
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| T |
4358917 |
tagattaaatatctagaatttgactccttgttttgggtgtttagagcttgtcacttgctaaaagcttaaatactatagcttaag |
4358834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 4364465 - 4364389
Alignment:
| Q |
17 |
aggtttaaatgtggacgactcagatttggatgtaacatgtctgtgcaatgtctagctgatgcgggaattgctgatttgc |
95 |
Q |
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| T |
4364465 |
aggtttaaatgtggaagcctcggatttggatacaccatgtctga--agtgtctagctgatgcgggaattgctgatttgc |
4364389 |
T |
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