View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_85 (Length: 328)
Name: NF8921_low_85
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_85 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 59 - 315
Target Start/End: Complemental strand, 6135612 - 6135358
Alignment:
| Q |
59 |
attcacaagtcattatactttaaagtgtaattatgacaacggttaactaataagaacaactttataaagaatacggtgtccaagtttcgcaaaatactac |
158 |
Q |
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| T |
6135612 |
attctcaagtcattatactttaaagtgtaattttgacaacggttaactaataagaacaactttataaagaatacggtgtccaagtttcgcaaaa-actac |
6135514 |
T |
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| Q |
159 |
tcggatttaggagctatccttttagattgtcatagaatctatattcaacattttgtaaactacggattgagtttactaggatacatgccaacgagactgt |
258 |
Q |
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| T |
6135513 |
tcggatttaggagctatccttttagattgtcatagaatctatattcgacattttgtaaactacggattgagtttactaggatacat-ccaatgagactgc |
6135415 |
T |
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| Q |
259 |
ccacactttagctaaggcagctacatcccttactaatttccgctcattaactgatgt |
315 |
Q |
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| T |
6135414 |
ccacactttagctaaggcagctacatctcttactaatttccgctcattaactgatgt |
6135358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 6135929 - 6135876
Alignment:
| Q |
18 |
ccaattatcttcaatctctttcaaaatgagtctataagcctattcacaagtcat |
71 |
Q |
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| T |
6135929 |
ccaattatcgtcaatctctttcaaaatgagtctataagcctattcacatgtcat |
6135876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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