View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_86 (Length: 323)
Name: NF8921_low_86
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_86 |
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| [»] scaffold0032 (2 HSPs) |
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| [»] scaffold0323 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 22 - 307
Target Start/End: Original strand, 27610924 - 27611209
Alignment:
| Q |
22 |
tcaaaggacggtcaattaaacaaggaaaagctaagactccacattgaatgatttaggtgacaaaataaaaagaaagaaaatgagagaatagaagggcaga |
121 |
Q |
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| T |
27610924 |
tcaaagggcggtcaattaaacaaggaaaagctaagactctacattgaatgatatagatgacaaaataaaaagaaagaaaatgagagaatagaagggcaga |
27611023 |
T |
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| Q |
122 |
ggcggcgatttacttgaaggagaaagctatagattttgtatcttccaaaaacaagtggctctacacacaatcatgagaaatgaacaaaaagctagcacaa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
27611024 |
ggcggcgatttacttgaaggagaaagctatagattttgtatcttccaaaaacaagtggctctgcacacaatcatgagaaatgaacagaaagctagcacaa |
27611123 |
T |
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| Q |
222 |
gaaacaaaaaggaagacggtgaaggaaaccttactatgaagtaatttcgaggtcggtgtaaaattgagttctagagggctatatat |
307 |
Q |
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| T |
27611124 |
gaaacaaaaaggaagacggtgaaggaaaccttactatgaagtaattttggggtcggtgtaaaattgagttctaaagggctatatat |
27611209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 21 - 307
Target Start/End: Complemental strand, 11064046 - 11063755
Alignment:
| Q |
21 |
gtcaaaggacggtcaattaaacaaggaaaagctaagactccacattgaatgatttaggtgacaaaataaaaagaaagaaaatgagagaatagaagggcag |
120 |
Q |
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| T |
11064046 |
gtcaaagggcggtcaattaaacaaggaaaagctaagactccacattgaatgatataggtgacaaaatgaaaagaaagaaaatgagagaatagaagggcag |
11063947 |
T |
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| Q |
121 |
aggcggcgatttacttgaaggagaaagctatagattttgtatcttccaaaa------acaagtggctctacacacaatcatgagaaatgaacaaaaagct |
214 |
Q |
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| T |
11063946 |
aggcggtgatttacttgaaggagaaagctatagattttgtatcttccaaaaacaaaaacaagtggctctgcacacaatcatgagaaatgaac-agaagct |
11063848 |
T |
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| Q |
215 |
agcacaagaaacaaaaaggaagacggtgaaggaaaccttactatgaagtaatttcgaggtcggtgtaaaattgagttctagagggctatatat |
307 |
Q |
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| T |
11063847 |
agcgcaagaaacaaagaggaagacggtgaaggaaaccttactatgaagtaattttggggtcggtgtaaaattgagttctagagggctatatat |
11063755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 17341846 - 17341941
Alignment:
| Q |
148 |
ctatagattttgtatcttccaaaaacaagtggctctacacacaatcatgagaaatgaacaaaaagctagcacaagaaac-aaaaaggaagacggtga |
243 |
Q |
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| T |
17341846 |
ctatagattttgtatcttccagaaacaagtggctctgcacacaatcatgaaaaatgaac-agaagctagagcaagaaacaaaaaaggaagacggtga |
17341941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 21364 - 21459
Alignment:
| Q |
148 |
ctatagattttgtatcttccaaaaacaagtggctctacacacaatcatgagaaatgaacaaaaagctagcacaagaaac-aaaaaggaagacggtga |
243 |
Q |
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| T |
21364 |
ctatagattttgtatcttccagaaacaagtggctctgcacacaatcatgaaaaatgaac-agaagctagtgcaagaaacaaaaaaggaagacggtga |
21459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 26065 - 26160
Alignment:
| Q |
148 |
ctatagattttgtatcttccaaaaacaagtggctctacacacaatcatgagaaatgaacaaaaagctagcacaagaaac-aaaaaggaagacggtga |
243 |
Q |
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| T |
26065 |
ctatagattttgtatcttccagaaacaagtggctctgcacacaatcatgaaaaatgaac-agaagctagagcaagaaacaaaaaaggaagacggtga |
26160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0323 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0323
Description:
Target: scaffold0323; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 9964 - 10015
Alignment:
| Q |
75 |
taggtgacaaaataaaaagaaagaaaatgagagaatagaagggcagaggcggc |
127 |
Q |
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| T |
9964 |
taggtgataaaataaaaagaaagaaa-tgagagaatacaagggcagaggcggc |
10015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 14277689 - 14277638
Alignment:
| Q |
75 |
taggtgacaaaataaaaagaaagaaaatgagagaatagaagggcagaggcggc |
127 |
Q |
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| T |
14277689 |
taggtgagaaaataaaaagaaag-aaatgtgagaatacaagggcagaggcggc |
14277638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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