View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_87 (Length: 319)
Name: NF8921_low_87
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_87 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 52 - 304
Target Start/End: Original strand, 34355304 - 34355556
Alignment:
| Q |
52 |
gtttgtatcagtaaatttgggactctgaatggtcatgacgctaagtactcttgagttcttcataataaattttgcaaagtgaaggccacatttcatgcct |
151 |
Q |
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| T |
34355304 |
gtttgtatcagtaaattcgggactctgaatggtcatgacgctaagtactcttgagttcttcataataaattttgcaaagtgaaggccacatttcatgcct |
34355403 |
T |
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| Q |
152 |
ttgaagtttctgagtgagcatattcttagatgagatgaaaggcatttcaaaataattattggttcctcccaatcttcatcacataatttgtggaatgtaa |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34355404 |
ttgaagtttctgagtgagcatattcttagatgagatgaaaggcatttcaaaataatttttggttcctcccaatcttcatcatataatttgtggaatgtaa |
34355503 |
T |
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| Q |
252 |
aaccctgaaaatgatacacagttgaataaattaaatttgtatgtgtgtaatat |
304 |
Q |
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| T |
34355504 |
aaccctgaaaatgatacatagttgaataaattaaatttgtatgtgtgtaatat |
34355556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 50 - 306
Target Start/End: Complemental strand, 35053766 - 35053504
Alignment:
| Q |
50 |
gtgtttgtatcagtaaatttgggactctgaatggtcatgacgctaagtactcttgagttcttcataataaattttg-caaag-----tgaaggccacatt |
143 |
Q |
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| T |
35053766 |
gtgtttgtatctgtgaatttgggaatctgaatggtcatgacgctaagtactcttgaattcttcataatatattttgtcaaaaatatatggaggccacatt |
35053667 |
T |
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| Q |
144 |
tcatgcctttgaagtttctgagtgagcatattcttagatgagatgaaaggcatttcaaaataattattggttcctcccaatcttcatcacataatttgtg |
243 |
Q |
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| T |
35053666 |
tcatgcctctgaagtttctgagtgagcatattcttagatgagatgaaaggcatttcaaaataatttttggttcctcccaatcttcatcacataatttgtg |
35053567 |
T |
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| Q |
244 |
gaatgtaaaaccctgaaaatgatacacagttgaataaattaaatttgtatgtgtgtaatatga |
306 |
Q |
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| T |
35053566 |
aaatgtaaaatcctgaaaacgatacacagttgaataaattaaatttgtatgtgtgtaatatga |
35053504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 49973027 - 49973097
Alignment:
| Q |
65 |
aatttgggactctgaatggtcatgacgctaagtactcttgagttcttcataataaattttgcaaagtgaag |
135 |
Q |
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| T |
49973027 |
aatttggcactctgaattttcatggcgctaagtactcttgaattcttcataatatattttgcaaagtgaag |
49973097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 49856571 - 49856642
Alignment:
| Q |
64 |
aaatttgggactctgaatggtcatgacgctaagtactcttgagttcttcataataaattttgcaaagtgaag |
135 |
Q |
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| T |
49856571 |
aaatttggcactctgaattttcatgatgcttagtactcttgaattctgcatgatatattttgcaaattgaag |
49856642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 23377712 - 23377762
Alignment:
| Q |
1 |
gataagacgtgattccaactgtattcaagttatgtttgtttcgagtttggt |
51 |
Q |
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|||||||||||||||||||||||| | || ||||||||||| || |||||| |
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| T |
23377712 |
gataagacgtgattccaactgtatacgaggtatgtttgttttgattttggt |
23377762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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