View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_90 (Length: 314)
Name: NF8921_low_90
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_90 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 39934504 - 39934792
Alignment:
| Q |
19 |
actcctacgaacttggtcaattaaagcagtgctcaagtaaaaagcaattcctataagcattgaaatcattgcagttgatgtgctcttaagtgattgtgga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39934504 |
actcctacgaacttggtcaattaaagcagtgctcaagtaaaaagcaattcctataagcattgaaatcattgcagttgatgtgctcttaagtgattgtgga |
39934603 |
T |
|
| Q |
119 |
aattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaattgtggaaaaaaccataacacggacatggaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39934604 |
aattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaattgtggaaaaaaccataacacggacatggaaa |
39934703 |
T |
|
| Q |
219 |
cattatatgcacatgtgctaatttgagtctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacaggttctgctc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
39934704 |
cattatatgcacatgtgctaatttgagtctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacatgtcctgctc |
39934792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 39695609 - 39695323
Alignment:
| Q |
19 |
actcctacgaacttggtcaattaaagcagtgctcaagtaaaaagcaattcctataagcattgaaatcattgcagttgatgtgctcttaagtgattgtgga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
39695609 |
actcctacgaacttggtcaattaaagcagtgctcaaataaaaagcaattcctataagcattgaaatcattgctgttgatgtgttcttaagtgattgtgga |
39695510 |
T |
|
| Q |
119 |
aattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaattgtggaaaaaaccataacacggacatggaaa |
218 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| |
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| T |
39695509 |
aattgttggtagtagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaactgtggaaacaaccataacacagacatggaaa |
39695410 |
T |
|
| Q |
219 |
cattatatgcacatgtgctaatttgagtctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacaggttctgctc |
307 |
Q |
| |
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||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
39695409 |
cat--tatgcacatgtactaatttgagtctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacatgtcctgctc |
39695323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 39704518 - 39704245
Alignment:
| Q |
19 |
actcctacgaacttggtcaattaaagcagtgctcaagtaaaaagcaattcctataagcattgaaatcattgcagttgatgtgctcttaagtgattgtgga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39704518 |
actcctacgaacttggtcaattaaagcagtgctcaaataaaaagcaatacctataagcattgaaatcattgcagttgatgtgatcttaagtgattgtgga |
39704419 |
T |
|
| Q |
119 |
aattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaattgtggaaaaaaccataacacggacatggaaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | |
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| T |
39704418 |
aattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaattgtggaaacaaccataacacagacatttcca |
39704319 |
T |
|
| Q |
219 |
cattatatgcacatgtgctaatttgagtctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacaca |
297 |
Q |
| |
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| |||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39704318 |
c-----atgcacatgtaccaatttgagcctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacaca |
39704245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 39928857 - 39929130
Alignment:
| Q |
19 |
actcctacgaacttggtcaattaaagcagtgctcaagtaaaaagcaattcctataagcattgaaatcattgcagttgatgtgctcttaagtgattgtgga |
118 |
Q |
| |
|
||||||||||||||| |||||||| ||| |||||| ||||||||||| |||||||||||||||| | ||||||||||||||||||| || ||||||||| |
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| T |
39928857 |
actcctacgaacttgatcaattaatgcattgctcatgtaaaaagcaacccctataagcattgaaaccgttgcagttgatgtgctctttagcgattgtgga |
39928956 |
T |
|
| Q |
119 |
aattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaattgtggaaaaaaccataacacggacatggaaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| || ||||| |||| |
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| T |
39928957 |
aattgttgataatagaatgtaacttgtccaggaaaatgaaacgcttctccgataccaaccaacactaattgtggaaacaaccataatacagacattgaaa |
39929056 |
T |
|
| Q |
219 |
cattatatgcacatgtgctaatttgagtctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacaca |
297 |
Q |
| |
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| ||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| | |||||| |
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| T |
39929057 |
c-----atgttcatgcgctaatttgagtctcttcgattcaacaagagcagagaccaccatgccaagaacattgaacaca |
39929130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 88 - 297
Target Start/End: Original strand, 38061603 - 38061807
Alignment:
| Q |
88 |
tgcagttgatgtgctcttaagtgattgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaat |
187 |
Q |
| |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||| |
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| T |
38061603 |
tgcagttgatgtgctcttcagtgactgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaatactcaccagcattaat |
38061702 |
T |
|
| Q |
188 |
tgtggaaaaaaccataacacggacatggaaacattatatgcacatgtgctaatttgagtctctttgattcaacaagagcagagacaaccatgccaagaac |
287 |
Q |
| |
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|||||||| || |||||||| ||||| || ||| |||||||||||||||||||| |||| ||||||||||| ||||||||||| || |||| |
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| T |
38061703 |
tgtggaaacaaacataacacagacatttccac-----atgaacatgtgctaatttgagtctttttgtctcaacaagagcggagacaaccatacccagaat |
38061797 |
T |
|
| Q |
288 |
agtcaacaca |
297 |
Q |
| |
|
||||||||| |
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|
| T |
38061798 |
ggtcaacaca |
38061807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 4847209 - 4847134
Alignment:
| Q |
73 |
aagcattgaaatcattgcagttgatgtgctcttaagtgattgtggaaattgttgataatagaatgtaacttgtcca |
148 |
Q |
| |
|
||||||||||||||||| ||||||||||||| || | ||||||||||||||| || || |||||||||| |||| |
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|
| T |
4847209 |
aagcattgaaatcattggagttgatgtgctcaaaaattattgtggaaattgtttgtagtaaaatgtaacttctcca |
4847134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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