View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8921_low_95 (Length: 304)

Name: NF8921_low_95
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8921_low_95
NF8921_low_95
[»] chr6 (64 HSPs)
chr6 (1-304)||(27604516-27604819)
chr6 (1-304)||(27592831-27593134)
chr6 (1-275)||(27718219-27718493)
chr6 (1-275)||(27610842-27611116)
chr6 (1-304)||(27677425-27677728)
chr6 (1-304)||(27679019-27679322)
chr6 (1-304)||(27706213-27706516)
chr6 (1-304)||(26802515-26802818)
chr6 (1-304)||(27698305-27698608)
chr6 (1-266)||(28781212-28781477)
chr6 (8-260)||(27427461-27427713)
chr6 (1-257)||(26884236-26884494)
chr6 (27-266)||(28786377-28786616)
chr6 (27-266)||(28792498-28792737)
chr6 (1-164)||(27724796-27724959)
chr6 (8-266)||(26861696-26861951)
chr6 (9-244)||(27531068-27531303)
chr6 (8-164)||(31284368-31284524)
chr6 (1-118)||(26646552-26646669)
chr6 (1-118)||(26752520-26752637)
chr6 (6-152)||(26341894-26342043)
chr6 (9-152)||(26848741-26848884)
chr6 (3-152)||(28227025-28227174)
chr6 (8-118)||(26656069-26656179)
chr6 (8-118)||(26762040-26762150)
chr6 (1-118)||(28139614-28139731)
chr6 (3-164)||(28242879-28243040)
chr6 (8-142)||(25481822-25481956)
chr6 (8-118)||(25579799-25579909)
chr6 (8-118)||(26623056-26623166)
chr6 (8-118)||(26729034-26729144)
chr6 (8-109)||(26823920-26824021)
chr6 (3-164)||(28325556-28325717)
chr6 (8-132)||(26048925-26049049)
chr6 (8-132)||(26070094-26070218)
chr6 (8-118)||(25538620-25538730)
chr6 (8-118)||(26056006-26056116)
chr6 (8-118)||(26075976-26076086)
chr6 (8-74)||(26142945-26143011)
chr6 (9-130)||(27338050-27338171)
chr6 (9-130)||(27398790-27398911)
chr6 (3-152)||(28181189-28181338)
chr6 (3-127)||(26937169-26937293)
chr6 (9-164)||(28098320-28098475)
chr6 (12-63)||(26635774-26635825)
chr6 (12-63)||(26741740-26741791)
chr6 (12-60)||(26959250-26959298)
chr6 (9-129)||(27214498-27214618)
chr6 (9-129)||(27234610-27234730)
chr6 (10-61)||(26975134-26975185)
chr6 (9-63)||(27665169-27665223)
chr6 (3-77)||(28150012-28150086)
chr6 (3-226)||(28234639-28234861)
chr6 (9-130)||(26811590-26811711)
chr6 (9-57)||(2184369-2184417)
chr6 (3-130)||(29826102-29826229)
chr6 (10-76)||(2184980-2185046)
chr6 (204-266)||(26646755-26646817)
chr6 (204-266)||(26752723-26752785)
chr6 (12-130)||(26949745-26949863)
chr6 (10-58)||(25071741-25071789)
chr6 (1-49)||(25506975-25507023)
chr6 (3-63)||(28297765-28297825)
chr6 (3-63)||(28514248-28514308)
[»] scaffold0349 (2 HSPs)
scaffold0349 (1-275)||(3260-3536)
scaffold0349 (1-275)||(14196-14469)
[»] scaffold0277 (2 HSPs)
scaffold0277 (1-257)||(4529-4785)
scaffold0277 (1-257)||(13490-13746)
[»] scaffold0003 (1 HSPs)
scaffold0003 (8-260)||(59650-59902)
[»] chr4 (10 HSPs)
chr4 (8-260)||(18073842-18074094)
chr4 (1-99)||(18699403-18699501)
chr4 (1-99)||(18679570-18679668)
chr4 (1-118)||(18655461-18655578)
chr4 (1-109)||(18731497-18731605)
chr4 (1-109)||(18724078-18724186)
chr4 (10-164)||(5090905-5091059)
chr4 (8-139)||(17989019-17989147)
chr4 (202-266)||(18655313-18655377)
chr4 (202-266)||(18723921-18723985)
[»] scaffold0419 (1 HSPs)
scaffold0419 (1-257)||(7598-7854)
[»] chr1 (3 HSPs)
chr1 (1-142)||(28127639-28127780)
chr1 (3-142)||(28164323-28164461)
chr1 (1-118)||(268341-268458)
[»] chr8 (1 HSPs)
chr8 (1-118)||(29273767-29273884)
[»] scaffold0038 (4 HSPs)
scaffold0038 (3-152)||(27523-27672)
scaffold0038 (3-164)||(43041-43202)
scaffold0038 (3-164)||(116871-117032)
scaffold0038 (3-226)||(34800-35023)
[»] chr2 (2 HSPs)
chr2 (3-63)||(3279763-3279823)
chr2 (10-63)||(17993736-17993789)
[»] scaffold0019 (1 HSPs)
scaffold0019 (3-152)||(58245-58394)


Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-147; HSPs: 64)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 27604819 - 27604516
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctt 100  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27604819 tttctatcaaatatgcctcttcttccttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcgttttgcctgttttctt 27604720  T
Q  101 tggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgaggataacataaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||       |||||||||||||||||||||||||||||    
T  27604719 tggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtcaagcattggctgagcataaaaaaaggtttcaaaatgatgaggataacataaag 27604620  T
Q  201 aggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctgggtactcaacactacataaatcctattttt 300  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27604619 aggttgcagcgatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctgggtactcaacactacataaatcctattttt 27604520  T
Q  301 ccct 304  Q
    ||||    
T  27604519 ccct 27604516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 27593134 - 27592831
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctt 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||| |||||||||||||    ||||||||||||||||    
T  27593134 tttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcgccctgttttgcctgttttctt 27593035  T
Q  101 tggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgaggataacataaag 200  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||       ||||||||||||||  | | |||||  ||    
T  27593034 tggtgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggag 27592935  T
Q  201 aggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctgggtactcaacactacataaatcctattttt 300  Q
    |||||||||  ||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||  ||| ||||||||||||||    
T  27592934 aggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcctattttt 27592835  T
Q  301 ccct 304  Q
    ||||    
T  27592834 ccct 27592831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 27718493 - 27718219
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctt 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||| ||||||||||||| || ||||||||||||||||    
T  27718493 tttctatcaactatgcctcttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagggtcgcctcgttttgcctgttttctt 27718394  T
Q  101 tggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgaggataacataaag 200  Q
     || ||||||||| || | ||||||||||| ||||||||||| ||| |||||||||||||||||       |||||||||||||| || |||||||  ||    
T  27718393 cggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatgataagaataacatggag 27718294  T
Q  201 aggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctgggtac 275  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27718293 aggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtac 27718219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 27611116 - 27610842
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctt 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||| ||||||||||||| || ||||||||||||||||    
T  27611116 tttctatcaactatgcctcttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagggtcgcctcgttttgcctgttttctt 27611017  T
Q  101 tggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgaggataacataaag 200  Q
     || ||||||||| || | ||||||||||| ||||||||||| ||| |||||||||||||||||       |||||||||||||| || |||||||  ||    
T  27611016 cggcgtggaacctactaaagtgcgacatcagaaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatgataagaataacatggag 27610917  T
Q  201 aggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctgggtac 275  Q
    |||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27610916 aggttgcagggatggaaagtggctctgagccaggctgcaaacttttccggctaccatgatagtcctcctgggtac 27610842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 27677728 - 27677425
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctt 100  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| ||||||||||||| || || |||||||||||||    
T  27677728 tttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgcctcgttctgcctgttttctt 27677629  T
Q  101 tggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgaggataacataaag 200  Q
    || |||||||||| ||  |||||||||||| ||||||||||| ||| |||||||||||||||||       ||||||||||||||  | | | |||  ||    
T  27677628 tgctgtggaacctactattgtgcgacatcagaaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaagcatggag 27677529  T
Q  201 aggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctgggtactcaacactacataaatcctattttt 300  Q
    |||||||||  |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||  ||| ||||||||||||||    
T  27677528 aggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcctattttt 27677429  T
Q  301 ccct 304  Q
    ||||    
T  27677428 ccct 27677425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 27679019 - 27679322
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctt 100  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| ||||||||||||| || || |||||||||||||    
T  27679019 tttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgcctcgttctgcctgttttctt 27679118  T
Q  101 tggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgaggataacataaag 200  Q
    ||||||||||||| ||  ||||||||||| |||||||||||| ||| |||||||||||||||||       ||||||||||||||  | | |||||  ||    
T  27679119 tggtgtggaacctactgttgtgcgacatcgtaaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggag 27679218  T
Q  201 aggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctgggtactcaacactacataaatcctattttt 300  Q
    ||||||||   |||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||  ||| ||||||||||||||    
T  27679219 aggttgcaaggatggaaaaaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcctattttt 27679318  T
Q  301 ccct 304  Q
    ||||    
T  27679319 ccct 27679322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 27706516 - 27706213
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctt 100  Q
    ||||||||| ||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| ||||||||||||| || || |||||||||| ||    
T  27706516 tttctatcacctatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgcctcgttctgcctgttttatt 27706417  T
Q  101 tggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgaggataacataaag 200  Q
    |||||| |||||| ||  ||||||||||| |||||||||||| ||| |||||||||||||||||       ||||||||||||||  | | |||||  ||    
T  27706416 tggtgtagaacctactattgtgcgacatcgtaaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggag 27706317  T
Q  201 aggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctgggtactcaacactacataaatcctattttt 300  Q
    |||||||||  |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||  ||| ||||||||||||||    
T  27706316 aggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcctattttt 27706217  T
Q  301 ccct 304  Q
    ||||    
T  27706216 ccct 27706213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 26802515 - 26802818
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctt 100  Q
    ||||||||||||||||||||||    ||||| ||||| |||||||||||||| ||||||||||| | ||||||||||||| || | |||||| |||||||    
T  26802515 tttctatcaactatgcctcttcaaaattttgcttggacgaacttgttcacattattcattgctataagacaaagggtcgcctcgtcttgcctattttctt 26802614  T
Q  101 tggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgaggataacataaag 200  Q
    ||||||||| ||| || ||||||| ||||||| | |||| || ||| |||||||||||||||||       |||||||||||||| ||||||||||  ||    
T  26802615 tggtgtggatcctactaatgtgcgccatcatacatgtagctatggtgaagcattggctgagcatgaaaaaaggtttcaaaatgataaggataacatggag 26802714  T
Q  201 aggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctgggtactcaacactacataaatcctattttt 300  Q
    |||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||  ||| ||||||||||||||    
T  26802715 aggttggagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctcggtacccaactttacttaaatcctattttt 26802814  T
Q  301 ccct 304  Q
    ||||    
T  26802815 ccct 26802818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 27698608 - 27698305
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctt 100  Q
    ||||| |||||||||| |||||||| ||||||||||| |||||||| ||||| ||||| ||||||  ||||||||||||| || ||||||||||||||||    
T  27698608 tttctctcaactatgcatcttcttcattttgtttggacgaacttgtccacataattcactgctacgagacaaagggtcgcctcgttttgcctgttttctt 27698509  T
Q  101 tggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgaggataacataaag 200  Q
     |||||||||||  || ||||| ||||||||||||||||||| || ||||||||||||||||||       ||||||||||||||  | | |||||  ||    
T  27698508 cggtgtggaaccaactaatgtgagacatcataaaggtagttatggcaaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggag 27698409  T
Q  201 aggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctgggtactcaacactacataaatcctattttt 300  Q
    |||||||||  |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||  ||||| ||||  ||| |||||||||| |||    
T  27698408 aggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcccaggtacccaactttacttaaatcctatattt 27698309  T
Q  301 ccct 304  Q
    ||||    
T  27698308 ccct 27698305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 28781212 - 28781477
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctt 100  Q
    ||||||||||||||||| ||||    ||||| ||||| |||||||||||||| ||||||||||||| |||||| |||||| || ||||||||||||||||    
T  28781212 tttctatcaactatgccacttcaaaattttgcttggacgaacttgttcacattattcattgctacaagacaaaaggtcgcctcgttttgcctgttttctt 28781311  T
Q  101 tggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgaggataacataaag 200  Q
    ||||||||| ||| || ||||||||||||||| ||||  ||| ||| ||||||||||||  |||       |||||||||||||| ||||||||||  ||    
T  28781312 tggtgtggatcctactaatgtgcgacatcatacaggtccttatggtgaagcattggctggacatgaaaagaggtttcaaaatgataaggataacatggag 28781411  T
Q  201 aggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcct 266  Q
    |||||||| ||||||||  ||||||||| ||| ||||||||||| ||||||||||||  |||||||    
T  28781412 aggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcct 28781477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 27427713 - 27427461
Alignment:
Q  8 caactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtg 107  Q
    ||||||||| |||||||| | |||||||||   |||||| ||||||||||| |||||||  || |||||| || || |||||||||||||||||||||||    
T  27427713 caactatgcatcttcttcatcttgtttggacacacttgtccacatcattcactgctacaaaaccaagggttgcctcgttttgcctgttttctttggtgtg 27427614  T
Q  108 gaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgaggataacataaagaggttgc 207  Q
    |||||| || ||||||||||||||| |||||| || |||||||||||||||||||||       ||||||||||||||  | | |||||  |||||||||    
T  27427613 gaacctactgatgtgcgacatcatacaggtaggtatggtaaagcattggctgagcatgaaaataggtttcaaaatgatacgaaaaacatggagaggttgc 27427514  T
Q  208 agcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgat 260  Q
    |||||||||||||||||||||| | ||||||||||||  || |||||||||||    
T  27427513 agcaatggaaagtggctctgagtctggctgctaacttgcccagctaccatgat 27427461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 26884236 - 26884494
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacat--cattcattgctacacgacaaagggtcgcgtcattttgcctgttttc 98  Q
    |||||| ||||||||| |||||||| ||||||||||| |||||||| |||||  |||||| ||||||  ||||||||||||| || |||||||||||||     
T  26884236 tttctaccaactatgcatcttcttcattttgtttggacgaacttgtccacatgtcattcactgctacgagacaaagggtcgcctcgttttgcctgttttt 26884335  T
Q  99 tttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgaggataacataa 198  Q
     |||||||||| ||| || ||||||||||||||| ||||||||| ||| ||||||||||||| |||       |||||||||||||| ||||||||||      
T  26884336 gttggtgtggatcctactgatgtgcgacatcatacaggtagttatggtgaagcattggctgaccatgaaaaaaggtttcaaaatgataaggataacatgg 26884435  T
Q  199 agaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat 257  Q
    |||||||||||| ||||||| ||||| |||| || | ||||||||| ||||||||||||    
T  26884436 agaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgtccggctaccat 26884494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 27 - 266
Target Start/End: Original strand, 28786377 - 28786616
Alignment:
Q  27 ttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgac 126  Q
    ||||| ||||| |||||||||||||| ||||||||||||| |||||| |||||| || |||||||||||||||||||||| || ||| || |||||||||    
T  28786377 ttttgcttggacgaacttgttcacattattcattgctacaagacaaaaggtcgcctcgttttgcctgttttctttggtgtcgatcctactaatgtgcgac 28786476  T
Q  127 atcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctct 226  Q
    |||||| |||| |||| ||| |||||||||||| ||||       |||||||||||||| ||||||||||  |||||||||| ||||||||  |||||||    
T  28786477 atcatacaggtcgttatggtgaagcattggctgggcatgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctct 28786576  T
Q  227 gagccaggctgctaacttttccggctaccatgatagtcct 266  Q
    || ||| ||||||||||| ||||||||||||  |||||||    
T  28786577 gacccaagctgctaacttgtccggctaccattctagtcct 28786616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 27 - 266
Target Start/End: Original strand, 28792498 - 28792737
Alignment:
Q  27 ttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgac 126  Q
    ||||| ||||| |||||||||||||| ||||||||||||| |||||| |||||| || |||||||||||||||||||||| || ||| || |||||||||    
T  28792498 ttttgcttggacgaacttgttcacattattcattgctacaagacaaaaggtcgcctcgttttgcctgttttctttggtgtcgatcctactaatgtgcgac 28792597  T
Q  127 atcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctct 226  Q
    |||||| |||| |||| ||| |||||||||||| ||||       |||||||||||||| ||||||||||  |||||||||| ||||||||  |||||||    
T  28792598 atcatacaggtcgttatggtgaagcattggctgggcatgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctct 28792697  T
Q  227 gagccaggctgctaacttttccggctaccatgatagtcct 266  Q
    || ||| ||||||||||| ||||||||||||  |||||||    
T  28792698 gacccaagctgctaacttgtccggctaccattctagtcct 28792737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 27724959 - 27724796
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctt 100  Q
    |||||||||||||||||| |||||||||||||||||| |||||||| ||||| ||||| ||||||| ||||||||||||| || ||||||||||||||||    
T  27724959 tttctatcaactatgcctattcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagggtcgcctcgttttgcctgttttctt 27724860  T
Q  101 tggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 164  Q
     || ||||||||| || | ||||||||||| ||||||||||| ||| |||||||||||||||||    
T  27724859 cggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtgaagcattggctgagcat 27724796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 8 - 266
Target Start/End: Original strand, 26861696 - 26861951
Alignment:
Q  8 caactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtg 107  Q
    ||||||||||||||| || |||||||||||||||||||| || |||||| | ||| |   |  ||||||||||||| ||||||||||||||| |||  ||    
T  26861696 caactatgcctcttcgtcattttgtttggatgaacttgtccaaatcattaactgcaa---ggaaaagggtcgcgtcgttttgcctgttttctatggcatg 26861792  T
Q  108 gaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgaggataacataaagaggttgc 207  Q
    || ||| || ||||||||||||||| ||||| ||| ||| ||||||||||| |||||       ||||||||||||||  |||||||||  |||||||||    
T  26861793 gatcctactaatgtgcgacatcatagaggtatttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgatatggataacatggagaggttgc 26861892  T
Q  208 agcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcct 266  Q
    ||  ||||||||| ||||||| ||| ||||||||||| || |||||||||  |||||||    
T  26861893 agagatggaaagttgctctgaaccaagctgctaacttgtcaggctaccattttagtcct 26861951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 27531303 - 27531068
Alignment:
Q  9 aactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtgg 108  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||| ||||||||||   ||||||||| |  |  |||||||||||||  |||||||||    
T  27531303 aactatgcatcttcttcattttgtttggacgaacttgttcacatcactcattgctacgatacaaagggttgtcttgttttgcctgtttttattggtgtgg 27531204  T
Q  109 aaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgaggataacataaagaggttgca 208  Q
    | ||| || ||||||||||||| | |||||| || ||| ||||||| |||| ||||        ||||||||||||| |||||||||   ||||||||||    
T  27531203 atcctactgatgtgcgacatcacacaggtagatatggtgaagcattagctgtgcataaaaaaaagtttcaaaatgataaggataacactgagaggttgca 27531104  T
Q  209 gcaatggaaagtggctctgagccaggctgctaactt 244  Q
    |||||||||||  ||||||||||| || ||||||||    
T  27531103 gcaatggaaagaagctctgagccaagcggctaactt 27531068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 31284368 - 31284524
Alignment:
Q  8 caactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtg 107  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||||||| |  || | |  ||| |||||| || ||||||| ||||||||||| |||    
T  31284368 caactatgcctcttcgtcgttttgtttggacgaacttgtccacatcattcacttgtataagcaaaatggtcgcctcgttttgcccgttttctttggcgtg 31284467  T
Q  108 gaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 164  Q
    || |||||||||||||||||||||| ||||||||| ||  ||||||||||| |||||    
T  31284468 gatccttctcatgtgcgacatcatagaggtagttatggagaagcattggctaagcat 31284524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 26646552 - 26646669
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctt 100  Q
    |||||||||||||||||||||||   ||||||||||| |||||||| ||||||||||||||||||| ||||||||||||  || ||||||| |||||||     
T  26646552 tttctatcaactatgcctcttctaaattttgtttggacgaacttgtccacatcattcattgctacaagacaaagggtcgtctcgttttgcccgttttcta 26646651  T
Q  101 tggtgtggaaccttctca 118  Q
    ||| ||||| ||| ||||    
T  26646652 tggcgtggatcctactca 26646669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 26752520 - 26752637
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctt 100  Q
    |||||||||||||||||||||||   ||||||||||| |||||||| ||||||||||||||||||| ||||||||||||  || ||||||| |||||||     
T  26752520 tttctatcaactatgcctcttctaaattttgtttggacgaacttgtccacatcattcattgctacaagacaaagggtcgtctcgttttgcccgttttcta 26752619  T
Q  101 tggtgtggaaccttctca 118  Q
    ||| ||||| ||| ||||    
T  26752620 tggcgtggatcctactca 26752637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 152
Target Start/End: Complemental strand, 26342043 - 26341894
Alignment:
Q  6 atcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgaca---aagggtcgcgtcattttgcctgttttctttg 102  Q
    ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| || | ||   |||||||||   |||||||||||||||| ||    
T  26342043 atcaactatgcttcttcttcgttttgtttggacgaacttgtccacatcattcattgcttcaaggcaaagaagggtcgcaaaattttgcctgttttctatg 26341944  T
Q  103 gtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagca 152  Q
       |||||||||||||||| |||| ||| |  || ||||||||| |||||    
T  26341943 acatggaaccttctcatgtacgacgtcagattgggagttacggtgaagca 26341894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 26848741 - 26848884
Alignment:
Q  9 aactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtgg 108  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||||||||||||| || |  ||||||| || |  || | |||||||||| |||  | |    
T  26848741 aactatgccacttcttcgttttgtttggacgaacttgtccacatcattcattgctccaaggaaaagggtagcatggttattcctgttttctatggcatag 26848840  T
Q  109 aaccttctcatgtgcgacatcataaaggtagttacggtaaagca 152  Q
    |||||||||||||||||||||| ||  ||||||| ||| |||||    
T  26848841 aaccttctcatgtgcgacatcagaatagtagttatggtgaagca 26848884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 152
Target Start/End: Original strand, 28227025 - 28227174
Alignment:
Q  3 tctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttg 102  Q
    |||||||| ||||| |||||||| ||||| ||||| |||||||| |||||||||||||||| || |  |||  | ||| |  |||||||  |||||| ||    
T  28227025 tctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcattgcttcaaggaaaatcggcgccttgttttgccaattttctatg 28227124  T
Q  103 gtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagca 152  Q
     ||||||||||||||||||||||||||| || || ||||| |||||||||    
T  28227125 atgtggaaccttctcatgtgcgacatcacaagggcagttatggtaaagca 28227174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 26656069 - 26656179
Alignment:
Q  8 caactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtg 107  Q
    ||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||| | |||||||||| |     ||||||||||||||| |||||||    
T  26656069 caactatgcatcttcttcattttgtttggacgaacttgtccacatcattcattgctataagacaaagggttgttcggttttgcctgttttctatggtgtg 26656168  T
Q  108 gaaccttctca 118  Q
    || ||| ||||    
T  26656169 gatcctactca 26656179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 26762040 - 26762150
Alignment:
Q  8 caactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtg 107  Q
    ||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||| | |||||||||| |     ||||||||||||||| |||||||    
T  26762040 caactatgcatcttcttcattttgtttggacgaacttgtccacatcattcattgctataagacaaagggttgttcggttttgcctgttttctatggtgtg 26762139  T
Q  108 gaaccttctca 118  Q
    || ||| ||||    
T  26762140 gatcctactca 26762150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 28139614 - 28139731
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctt 100  Q
    |||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||| | |||| ||  ||||||||  |  |  |||||||||||||||     
T  28139614 tttccatcaactatgcctcttcttcgttttgcttggacgaacttgtccacatcattgactgcttcaacacaaagggatgtttggttttgcctgttttcta 28139713  T
Q  101 tggtgtggaaccttctca 118  Q
    ||||||||| ||||||||    
T  28139714 tggtgtggatccttctca 28139731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 28242879 - 28243040
Alignment:
Q  3 tctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttg 102  Q
    |||||||| ||||| |||||||| ||||| ||||| |||||||| ||||||||||| |||| || || ||| || ||| |  |||||||  |||||| ||    
T  28242879 tctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgctgcaagaaaaatggacgcctagttttgccaattttctatg 28242978  T
Q  103 gtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 164  Q
     ||||||||||||| | ||| ||||||| |  || ||||| ||||||||| |||||||||||    
T  28242979 atgtggaaccttctaacgtgagacatcagattggcagttatggtaaagcactggctgagcat 28243040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 25481822 - 25481956
Alignment:
Q  8 caactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtg 107  Q
    ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||||| ||||||| || || |  | || || ||||||| |||||||    
T  25481822 caactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattacccgttttctatggtgtg 25481921  T
Q  108 gaaccttctcatgtgcgacatcataaaggtagtta 142  Q
    || ||| || |||| |||| ||||| | |||||||    
T  25481922 gatcctactgatgttcgacgtcatacatgtagtta 25481956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 25579799 - 25579909
Alignment:
Q  8 caactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtg 107  Q
    ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||||| ||||||| || || |  | ||||| ||||||| || ||||    
T  25579799 caactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccgttttctatgatgtg 25579898  T
Q  108 gaaccttctca 118  Q
    |||||| ||||    
T  25579899 gaacctactca 25579909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 26623056 - 26623166
Alignment:
Q  8 caactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtg 107  Q
    ||||||||| | |||||| |||||||||||||||||||| ||||||||||| |||||||  |||||||||||  || ||||||| || |||| ||| |||    
T  26623056 caactatgcatattcttcattttgtttggatgaacttgtccacatcattcactgctacaaaacaaagggtcgtctcgttttgcccgtcttctatggcgtg 26623155  T
Q  108 gaaccttctca 118  Q
    || ||| ||||    
T  26623156 gatcctactca 26623166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 26729034 - 26729144
Alignment:
Q  8 caactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtg 107  Q
    ||||||||| | |||||| |||||||||||||||||||| ||||||||||| |||||||  |||||||||||  || ||||||| || |||| ||| |||    
T  26729034 caactatgcatattcttcattttgtttggatgaacttgtccacatcattcactgctacaaaacaaagggtcgtctcgttttgcccgtcttctatggcgtg 26729133  T
Q  108 gaaccttctca 118  Q
    || ||| ||||    
T  26729134 gatcctactca 26729144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 26823920 - 26824021
Alignment:
Q  8 caactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtg 107  Q
    |||||||||||||||||| ||||||||||| |||||||| ||||||||||    ||||| |  |||||| ||| || ||||||||||||||| |||||||    
T  26823920 caactatgcctcttcttcattttgtttggacgaacttgtccacatcattcgcgtctacaaggaaaaggggcgcctcgttttgcctgttttctatggtgtg 26824019  T
Q  108 ga 109  Q
    ||    
T  26824020 ga 26824021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 28325556 - 28325717
Alignment:
Q  3 tctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttg 102  Q
    |||||||| ||||| |||||||| ||||| |||||||||||||| ||||| ||||| |||| ||    ||| || ||| |  ||| ||| |||||||  |    
T  28325556 tctatcaattatgcttcttcttccttttgcttggatgaacttgtccacattattcactgcttcaaagaaaatgggcgcctagtttagccagttttctacg 28325655  T
Q  103 gtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 164  Q
     ||||||||||||||| ||||||||||| || || ||||| ||||||||| |||| ||||||    
T  28325656 atgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagcactggccgagcat 28325717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 26048925 - 26049049
Alignment:
Q  8 caactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtg 107  Q
    ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||||| ||||||| || || |  | ||||| ||||| | || ||||    
T  26048925 caactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccgttttttatgatgtg 26049024  T
Q  108 gaaccttctcatgtgcgacatcata 132  Q
    |||||| ||||  | ||||||||||    
T  26049025 gaacctactcacatacgacatcata 26049049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 26070094 - 26070218
Alignment:
Q  8 caactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtg 107  Q
    ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||||| ||||||| || || |  | ||||| ||||| | || ||||    
T  26070094 caactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccgttttttatgatgtg 26070193  T
Q  108 gaaccttctcatgtgcgacatcata 132  Q
    |||||| ||||  | ||||||||||    
T  26070194 gaacctactcacatacgacatcata 26070218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 25538620 - 25538730
Alignment:
Q  8 caactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtg 107  Q
    ||||||||| |||||||| ||||||||||| |||||||| || |||||||| ||||||| ||||||| || || |  | ||||| ||||||| || ||||    
T  25538620 caactatgcatcttcttcattttgtttggacgaacttgtccagatcattcactgctacaagacaaagagttgcttagtattgcccgttttctatgatgtg 25538719  T
Q  108 gaaccttctca 118  Q
    |||||| ||||    
T  25538720 gaacctactca 25538730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 26056006 - 26056116
Alignment:
Q  8 caactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtg 107  Q
    ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||||  |||||| || || |  | ||||| ||||||| || ||||    
T  26056006 caactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaacacaaagagttgcttagtattgcccgttttctatgatgtg 26056105  T
Q  108 gaaccttctca 118  Q
    |||||| ||||    
T  26056106 gaacctactca 26056116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 26075976 - 26076086
Alignment:
Q  8 caactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtg 107  Q
    ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||||  |||||| || || |  | ||||| ||||||| || ||||    
T  26075976 caactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaacacaaagagttgcttagtattgcccgttttctatgatgtg 26076075  T
Q  108 gaaccttctca 118  Q
    |||||| ||||    
T  26076076 gaacctactca 26076086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 26142945 - 26143011
Alignment:
Q  8 caactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 74  Q
    ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||||| |||||||    
T  26142945 caactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaag 26143011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 27338171 - 27338050
Alignment:
Q  9 aactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtgg 108  Q
    |||||||| |||||||| ||||| ||||| |||||||| ||||||||||| ||||||| ||||| |||| |     ||||||||||||||| ||||| ||    
T  27338171 aactatgcatcttcttcattttgcttggacgaacttgtccacatcattcactgctacaagacaaggggttgttcggttttgcctgttttctatggtgcgg 27338072  T
Q  109 aaccttctcatgtgcgacatca 130  Q
    | ||| |||| || ||||||||    
T  27338071 atcctactcacgtacgacatca 27338050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 27398911 - 27398790
Alignment:
Q  9 aactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtgg 108  Q
    |||||||| |||||||| ||||| ||||| |||||||| ||||||||||| ||||||| ||||| |||| |     ||||||||||||||| ||||| ||    
T  27398911 aactatgcatcttcttcattttgcttggacgaacttgtccacatcattcactgctacaagacaaggggttgttcggttttgcctgttttctatggtgcgg 27398812  T
Q  109 aaccttctcatgtgcgacatca 130  Q
    | ||| |||| || ||||||||    
T  27398811 atcctactcacgtacgacatca 27398790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 152
Target Start/End: Original strand, 28181189 - 28181338
Alignment:
Q  3 tctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttg 102  Q
    |||||||| ||||| |||||||| ||||| ||||| |||||||| ||||||||||| |||| || |  ||  || ||  |  |||||||  |||||| ||    
T  28181189 tctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgcttcaaggaaagcgggcgtctagttttgccaattttctatg 28181288  T
Q  103 gtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagca 152  Q
     ||||||||||||||| ||||||||||| || || ||||| |||||||||    
T  28181289 atgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagca 28181338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 26937169 - 26937293
Alignment:
Q  3 tctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttg 102  Q
    ||||||||||||||| ||||||| ||||||||||| |||||||| |||||| || | |||| || |||||| ||||   | ||||||||| |||||| ||    
T  26937169 tctatcaactatgccacttcttcattttgtttggacgaacttgtccacatcgttgactgcttcaagacaaaaggtcatctaattttgcctattttctatg 26937268  T
Q  103 gtgtggaaccttctcatgtgcgaca 127  Q
      ||||| |||||||| || |||||    
T  26937269 aagtggatccttctcacgttcgaca 26937293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 164
Target Start/End: Complemental strand, 28098475 - 28098320
Alignment:
Q  9 aactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctac-acgacaaagggtcgcgtcattttgcctgttttctttggtgtg 107  Q
    |||||||| ||||||| ||||||||||||||||||||| |||||||||||  | ||| | || ||||||| || || |||| ||| |||| | ||  |||    
T  28098475 aactatgcttcttctttgttttgtttggatgaacttgtccacatcattcaccgttacgaaga-aaagggttgcttcgtttttcctattttttgtgacgtg 28098377  T
Q  108 gaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 164  Q
    ||||||||||| ||||||||||| |  || ||||| ||| ||||||| ||| |||||    
T  28098376 gaaccttctcacgtgcgacatcagacggggagttatggtgaagcattagctaagcat 28098320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 26635774 - 26635825
Alignment:
Q  12 tatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgct 63  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||||||||||||    
T  26635774 tatgcttcttctttgttttgtttggatgaacttgtccacatcattcattgct 26635825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 26741740 - 26741791
Alignment:
Q  12 tatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgct 63  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||||||||||||    
T  26741740 tatgcttcttctttgttttgtttggatgaacttgtccacatcattcattgct 26741791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 26959250 - 26959298
Alignment:
Q  12 tatgcctcttcttcgttttgtttggatgaacttgttcacatcattcatt 60  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||||||||    
T  26959250 tatgcttcttcttcgttttatttggatgaacttgtccacatcattcatt 26959298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 27214498 - 27214618
Alignment:
Q  9 aactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtgg 108  Q
    ||||||||  ||||||| ||||||||||| |||||||| ||||||| |||||||| || |  ||| |||||| |  || | |||||||||| ||| || |    
T  27214498 aactatgctacttcttcattttgtttggacgaacttgtccacatcactcattgctccaaggaaaaaggtcgccttgttctacctgttttctatggcgttg 27214597  T
Q  109 aaccttctcatgtgcgacatc 129  Q
    ||||||||||  |||||||||    
T  27214598 aaccttctcacttgcgacatc 27214618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 27234730 - 27234610
Alignment:
Q  9 aactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtgg 108  Q
    ||||||||  ||||||| ||||||||||| |||||||| ||||||| |||||||| || |  ||| |||||| |  || | |||||||||| ||| || |    
T  27234730 aactatgctacttcttcattttgtttggacgaacttgtccacatcactcattgctccaaggaaaaaggtcgccttgttctacctgttttctatggcgttg 27234631  T
Q  109 aaccttctcatgtgcgacatc 129  Q
    ||||||||||  |||||||||    
T  27234630 aaccttctcacttgcgacatc 27234610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 26975134 - 26975185
Alignment:
Q  10 actatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattg 61  Q
    ||||||| |||||||| ||||||||||| |||||||| ||||||||||||||    
T  26975134 actatgcttcttcttcattttgtttggacgaacttgtccacatcattcattg 26975185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 27665223 - 27665169
Alignment:
Q  9 aactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgct 63  Q
    ||||||||  ||||||| |||||||| ||||||||||| ||||||||||||||||    
T  27665223 aactatgctacttcttcattttgtttagatgaacttgtccacatcattcattgct 27665169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 28150012 - 28150086
Alignment:
Q  3 tctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggt 77  Q
    |||||||||||| | |||||||| ||||||||||| |||||||| ||||| ||||| |||| || | ||||||||    
T  28150012 tctatcaactatacttcttcttcattttgtttggacgaacttgtccacattattcactgcttcaaggcaaagggt 28150086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 226
Target Start/End: Original strand, 28234639 - 28234861
Alignment:
Q  3 tctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttg 102  Q
    |||||||| ||||| |||||||| ||||| ||||| |||||||| ||||||||| || ||| |  |  |||  | ||| |  |||||||  |||||| ||    
T  28234639 tctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcatttat-gcttcgaggaaaatagacgcctagttttgccaattttctatg 28234737  T
Q  103 gtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgaggataacataaagag 202  Q
     ||||||||||||||| ||||||||||| || || ||||| ||||||||| ||| ||| |||        ||| |||||| |  ||||||||||  ||||    
T  28234738 atgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagcactggatgatcatataaagaagttccaaaataacaaggataacatggagag 28234837  T
Q  203 gttgcagcaatggaaagtggctct 226  Q
    ||||||| |||||||  |||||||    
T  28234838 gttgcagaaatggaagatggctct 28234861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 26811590 - 26811711
Alignment:
Q  9 aactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtgg 108  Q
    ||||||||  |||| ||||||||||| ||||| ||||| ||||||||| | | || || |  ||| |||||| |  || | || ||||||| ||||||||    
T  26811590 aactatgcaacttcgtcgttttgtttagatgagcttgtccacatcattaactacttcaaggaaaaaggtcgccttgttctaccagttttctatggtgtgg 26811689  T
Q  109 aaccttctcatgtgcgacatca 130  Q
    |||||||||| |||||||||||    
T  26811690 aaccttctcacgtgcgacatca 26811711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 2184369 - 2184417
Alignment:
Q  9 aactatgcctcttcttcgttttgtttggatgaacttgttcacatcattc 57  Q
    |||||||| |||||||| ||||||||||| |||||||| ||||||||||    
T  2184369 aactatgcttcttcttcattttgtttggacgaacttgtccacatcattc 2184417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 29826102 - 29826229
Alignment:
Q  3 tctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttg 102  Q
    |||| ||| ||||| |||||||||||||| || ||||||||||| || ||  || | ||   || ||  ||||||||  || |||||||| |||||| ||    
T  29826102 tctaccaattatgcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatg 29826201  T
Q  103 gtgtggaaccttctcatgtgcgacatca 130  Q
     |||||| ||||||||||||||||||||    
T  29826202 atgtggatccttctcatgtgcgacatca 29826229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 2184980 - 2185046
Alignment:
Q  10 actatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaaggg 76  Q
    ||||||| |||||||| ||||||||||| |||||||| || ||||||| ||||| || | |||||||    
T  2184980 actatgcttcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaaggg 2185046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 26646755 - 26646817
Alignment:
Q  204 ttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcct 266  Q
    ||||| ||||||||  ||||||||| ||| ||||||||||| ||||| |||||| ||||||||    
T  26646755 ttgcatcaatggaagttggctctgacccaagctgctaacttgtccggataccattatagtcct 26646817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 26752723 - 26752785
Alignment:
Q  204 ttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcct 266  Q
    ||||| ||||||||  ||||||||| ||| ||||||||||| ||||| |||||| ||||||||    
T  26752723 ttgcatcaatggaagttggctctgacccaagctgctaacttgtccggataccattatagtcct 26752785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 26949745 - 26949863
Alignment:
Q  12 tatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaac 111  Q
    ||||| |||||||| |||||||| || |||||||| || |||||||| | || || |  ||| |||||| |  || |||| ||||||| || ||| ||||    
T  26949745 tatgcttcttcttcattttgtttagacgaacttgtccatatcattcactacttcaaggaaaaaggtcgccttgttctgccagttttctatgatgtagaac 26949844  T
Q  112 cttctcatgtgcgacatca 130  Q
    ||||||| |||||||||||    
T  26949845 cttctcacgtgcgacatca 26949863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 25071741 - 25071789
Alignment:
Q  10 actatgcctcttcttcgttttgtttggatgaacttgttcacatcattca 58  Q
    ||||||| |||||||| |||||||| || |||||||| |||||||||||    
T  25071741 actatgcttcttcttcattttgtttagacgaacttgtccacatcattca 25071789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 25507023 - 25506975
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttca 49  Q
    ||||||||||||||||||||||    ||||||||||| |||||||||||    
T  25507023 tttctatcaactatgcctcttcaaaattttgtttggaggaacttgttca 25506975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 28297825 - 28297765
Alignment:
Q  3 tctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgct 63  Q
    |||| ||| ||||| |||||||| ||||| ||||| |||||||| ||||||||||| ||||    
T  28297825 tctaccaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgct 28297765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #64
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 28514248 - 28514308
Alignment:
Q  3 tctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgct 63  Q
    |||| ||| ||||| |||||||| ||||| ||||| |||||||| ||||||||||| ||||    
T  28514248 tctaccaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgct 28514308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 3536 - 3260
Alignment:
Q  1 tttctatcaac-tatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttct 99  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| ||||||||||||| || || |||||||||| |    
T  3536 tttctatcaacctatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgcctcgttctgcctgttttat 3437  T
Q  100 ttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgag-gataacataa 198  Q
    |||||||||||||| ||  ||||||||||| |||||||||||| ||| |||||||||||||||||       ||||||||||||||  |  | |||||      
T  3436 ttggtgtggaacctactattgtgcgacatcgtaaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaaacatgg 3337  T
Q  199 agaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctgggtac 275  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3336 agaggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtac 3260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 14469 - 14196
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctt 100  Q
    |||||||||||||||||| |||||||||||||||||| |||||||| ||||| ||||| ||||||| ||||||||||||| || ||||||||||||||||    
T  14469 tttctatcaactatgcct-ttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagggtcgcctcgttttgcctgttttctt 14371  T
Q  101 tggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgaggataacataaag 200  Q
     || ||||||||| || | ||||||||||| ||||||||||| ||| |||||||||||||||||       ||||||||||||||  | | |||||  ||    
T  14370 cggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggag 14271  T
Q  201 aggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctgggtac 275  Q
    |||||||||  |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14270 aggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtac 14196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 4785 - 4529
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctt 100  Q
    ||||||||  |||||||| |||||||||||||||||| |||||||| ||||| ||||| ||||||| ||||||||||||| || ||||||||||||||||    
T  4785 tttctatcttctatgccttttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagggtcgcctcgttttgcctgttttctt 4686  T
Q  101 tggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgaggataacataaag 200  Q
     || ||||||||| || | ||||||||||  ||||||||||| ||| |||||||||||||||||       |||||||||||||| || |||||||  ||    
T  4685 cggcgtggaacctactaacgtgcgacatctgaaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatgataagaataacatggag 4586  T
Q  201 aggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat 257  Q
    |||||||| ||||||||  ||||||||| ||| ||||||||||| ||||||||||||    
T  4585 aggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat 4529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 13746 - 13490
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctt 100  Q
    ||||||||||||| ||| ||||    ||||| ||||| |||||||||||||| ||||||||||||| |||||| |||||| || ||||||||||||||||    
T  13746 tttctatcaactacgccacttcaaaattttgcttggacgaacttgttcacattattcattgctacaagacaaaaggtcgcctcgttttgcctgttttctt 13647  T
Q  101 tggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgaggataacataaag 200  Q
    ||||||||| ||| || ||||||||||||||| |||| |||| ||| ||||||||||||  |||       |||||||||||||| || |||||||  ||    
T  13646 tggtgtggatcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctggacatgaaaagaggtttcaaaatgataagaataacatggag 13547  T
Q  201 aggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat 257  Q
     | ||||| ||||||||  ||||||||| ||| ||||||||||| ||||||||||||    
T  13546 cgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat 13490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 59650 - 59902
Alignment:
Q  8 caactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtg 107  Q
    ||||||||| |||||||| | |||||||||   |||||| ||||||||||| |||||||  || |||||| || || |||||||||||||||||||||||    
T  59650 caactatgcatcttcttcatcttgtttggacacacttgtccacatcattcactgctacaaaaccaagggttgcctcgttttgcctgttttctttggtgtg 59749  T
Q  108 gaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgaggataacataaagaggttgc 207  Q
    |||||| || ||||||||||||||| |||||| || |||||||||||||||||||||       ||||||||||||||  | | |||||  |||||||||    
T  59750 gaacctactgatgtgcgacatcatacaggtaggtatggtaaagcattggctgagcatgaaaataggtttcaaaatgatacgaaaaacatggagaggttgc 59849  T
Q  208 agcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgat 260  Q
    |||||||||||||||||||||| | ||||||||||||  || |||||||||||    
T  59850 agcaatggaaagtggctctgagtctggctgctaacttgcccagctaccatgat 59902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 18073842 - 18074094
Alignment:
Q  8 caactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtg 107  Q
    ||||||||| |||||||| | |||||||||   |||||| ||||||||||| |||||||  || |||||| || || |||||||||||||||||||||||    
T  18073842 caactatgcatcttcttcatcttgtttggacacacttgtccacatcattcactgctacaaaaccaagggttgcctcgttttgcctgttttctttggtgtg 18073941  T
Q  108 gaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgaggataacataaagaggttgc 207  Q
    |||||| || ||||||||||||||| |||||| || |||||||||||||||||||||       ||||||||||||||  | | |||||  |||||||||    
T  18073942 gaacctactgatgtgcgacatcatacaggtaggtatggtaaagcattggctgagcatgaaaataggtttcaaaatgatacgaaaaacatggagaggttgc 18074041  T
Q  208 agcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgat 260  Q
    |||||||||||||||||||||| | ||||||||||||  || |||||||||||    
T  18074042 agcaatggaaagtggctctgagtctggctgctaacttgcccagctaccatgat 18074094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 18699501 - 18699403
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttct 99  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||| |||||| |||||  || |||||||||||||||    
T  18699501 tttctatcaactatgcctcttcttcattttgtttggacgaacttgttcacatcattcactgctacaagacaaaaggtcgtctcgttttgcctgttttct 18699403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 18679668 - 18679570
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttct 99  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| ||||||||||||  |  |||||||||||||||    
T  18679668 tttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgtcttgttttgcctgttttct 18679570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 18655578 - 18655461
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctt 100  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||| ||||||| ||||||||||||  || |||| ||||||||||     
T  18655578 tttctatcaactatgcctcttcttcattttgtttggacgaacttgtccgcatcattcactgctacaagacaaagggtcgtctcgtttttcctgttttcta 18655479  T
Q  101 tggtgtggaaccttctca 118  Q
    ||| ||||| ||| ||||    
T  18655478 tggcgtggatcctactca 18655461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 18731605 - 18731497
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctt 100  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| || ||||||| ||||||||||||  |  |||||||||||||||     
T  18731605 tttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcatgcactgctacaagacaaagggtcgtcttgttttgcctgttttcta 18731506  T
Q  101 tggtgtgga 109  Q
    ||| |||||    
T  18731505 tggcgtgga 18731497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 18724186 - 18724078
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctt 100  Q
    ||||||||||||||||||||||||| ||||||||| | |||||||| |||||||| || ||||||| ||||||||||||  |  |||||||||||||||     
T  18724186 tttctatcaactatgcctcttcttcattttgtttgaacgaacttgtccacatcatgcactgctacaagacaaagggtcgtcttgttttgcctgttttcta 18724087  T
Q  101 tggtgtgga 109  Q
    ||| |||||    
T  18724086 tggcgtgga 18724078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 5091059 - 5090905
Alignment:
Q  10 actatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtgga 109  Q
    ||||||| ||||||||||||||||| ||||||||||| || || ||||| |||| || |  ||| ||| || |  |||||||| |||||| |||||||||    
T  5091059 actatgcttcttcttcgttttgtttagatgaacttgtccatattattcactgctccaaggaaaatggttgcctggttttgcctattttctatggtgtgga 5090960  T
Q  110 accttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 164  Q
    |||||||||||||||| |||| |  || ||||| ||| ||||| | |||||||||    
T  5090959 accttctcatgtgcgatatcagactggaagttatggtgaagcacttgctgagcat 5090905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 17989147 - 17989019
Alignment:
Q  8 caactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcct-gttttctttggtgt 106  Q
    ||||||||| |||||||| | |||||||||   |||||| ||||||||||| |||||||   ||  ||||  | || |||||||| ||||||||||||||    
T  17989147 caactatgcatcttcttcatcttgtttggacacacttgtccacatcattcactgctacaaacca--gggttcc-tcgttttgccttgttttctttggtgt 17989051  T
Q  107 ggaaccttctcatgtgcgacatcataaaggtag 139  Q
    |||||| ||| ||||||||||||||| ||||||    
T  17989050 ggaacc-tctgatgtgcgacatcatacaggtag 17989019  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 18655377 - 18655313
Alignment:
Q  202 ggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcct 266  Q
    ||||||| ||||||||  ||||||||| | | ||||||||||| ||||||||||||  |||||||    
T  18655377 ggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccattctagtcct 18655313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 18723985 - 18723921
Alignment:
Q  202 ggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcct 266  Q
    ||||||| ||||||||  ||||||||| | | ||||||||||| ||||||||||||  |||||||    
T  18723985 ggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccattttagtcct 18723921  T

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Target: scaffold0419 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 7598 - 7854
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctt 100  Q
    ||||||||||||| ||| ||||    ||||| ||||| |||||||||||||| ||||||||||||| |||| | |||||| || ||||||||||||||||    
T  7598 tttctatcaactacgccacttcaaaattttgcttggacgaacttgttcacattattcattgctacaagacagaaggtcgcctcgttttgcctgttttctt 7697  T
Q  101 tggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgaggataacataaag 200  Q
    ||||||||| ||| || ||||||||||||||| |||| |||| ||| ||||||||||||  |||       |||||||||||||| || |||||||  ||    
T  7698 tggtgtggatcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctggacatgaaaagaggtttcaaaatgataagaataacatggag 7797  T
Q  201 aggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat 257  Q
     | ||||| ||||||||  ||||||||| ||| ||||||||||| ||||||||||||    
T  7798 cgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat 7854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 28127780 - 28127639
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctt 100  Q
    |||||| |||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| ||||||||||||| |  ||||||||||||||||    
T  28127780 tttctaccaactatgcctcttcttcattttgtttggacgaacttgtgcacatcattcactgctacaagacaaagggtcgcctagttttgcctgttttctt 28127681  T
Q  101 tggtgtggaaccttctcatgtgcgacatcataaaggtagtta 142  Q
    ||| ||||| ||| || |||||||| |||||| ||| |||||    
T  28127680 tggcgtggatcctactgatgtgcgatatcatacagggagtta 28127639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 28164461 - 28164323
Alignment:
Q  3 tctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttg 102  Q
    ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| ||||||||||||| |  |||||||||||||| |||    
T  28164461 tctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgcctagttttgcctgttttc-ttg 28164363  T
Q  103 gtgtggaaccttctcatgtgcgacatcataaaggtagtta 142  Q
    | ||||| ||| || ||||||||||||||| ||| |||||    
T  28164362 gcgtggatcctactgatgtgcgacatcatacagggagtta 28164323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 268458 - 268341
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctt 100  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| || |||||||||  |||||||||| || ||||     
T  268458 tttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagaaaaagggtcgtctcattttgcccgtcttcta 268359  T
Q  101 tggtgtggaaccttctca 118  Q
    ||| ||||| ||| ||||    
T  268358 tggcgtggatcctactca 268341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 29273884 - 29273767
Alignment:
Q  1 tttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctt 100  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| ||||||||||||  ||||||||||||| ||||     
T  29273884 tttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgtctcattttgcctgtcttcta 29273785  T
Q  101 tggtgtggaaccttctca 118  Q
    ||| ||||| ||| ||||    
T  29273784 tggcgtggatcctactca 29273767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 152
Target Start/End: Original strand, 27523 - 27672
Alignment:
Q  3 tctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttg 102  Q
    |||||||| ||||| |||||||| ||||| ||||| |||||||| |||||||||||||||| || |  |||  | ||| |  |||||||  |||||| ||    
T  27523 tctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcattgcttcaaggaaaatcggcgccttgttttgccaattttctatg 27622  T
Q  103 gtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagca 152  Q
     ||||||||||||||||||||||||||| || || ||||| |||||||||    
T  27623 atgtggaaccttctcatgtgcgacatcacaagggcagttatggtaaagca 27672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 43041 - 43202
Alignment:
Q  3 tctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttg 102  Q
    |||||||| ||||| |||||||| ||||| ||||| |||||||| ||||||||||| |||| || || ||| || ||| |  |||||||  |||||| ||    
T  43041 tctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgctgcaagaaaaatggacgcctagttttgccaattttctatg 43140  T
Q  103 gtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 164  Q
     ||||||||||||| | ||| ||||||| |  || ||||| ||||||||| |||||||||||    
T  43141 atgtggaaccttctaacgtgagacatcagattggcagttatggtaaagcactggctgagcat 43202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 116871 - 117032
Alignment:
Q  3 tctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttg 102  Q
    |||||||| ||||| |||||||| ||||| |||||||||||||| ||||| ||||| |||| ||    ||| || ||| |  ||| ||| |||||||  |    
T  116871 tctatcaattatgcttcttcttccttttgcttggatgaacttgtccacattattcactgcttcaaagaaaatgggcgcctagtttagccagttttctacg 116970  T
Q  103 gtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 164  Q
     ||||||||||||||| ||||||||||| || || ||||| ||||||||| |||| ||||||    
T  116971 atgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagcactggccgagcat 117032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 226
Target Start/End: Original strand, 34800 - 35023
Alignment:
Q  3 tctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttg 102  Q
    |||||||| ||||| |||||||| ||||| ||||| |||||||| ||||||||||| |||| || |  ||  || ||  |  |||||||  |||||| ||    
T  34800 tctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgcttcaaggaaagcgggcgtctagttttgccaattttctatg 34899  T
Q  103 gtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatgatgaggataacataaagag 202  Q
     ||||||||||||||| ||||||||||| || || ||||| ||||||||| ||| ||| |||        ||| |||||| |  ||||||||||  ||||    
T  34900 atgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagcactggatgatcatataaagaagttccaaaataacaaggataacatggagag 34999  T
Q  203 gttgcagcaatggaaagtggctct 226  Q
    ||||||| |||||||  |||||||    
T  35000 gttgcagaaatggaagatggctct 35023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 3279763 - 3279823
Alignment:
Q  3 tctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgct 63  Q
    |||||||||||||| ||||||   ||||||||||| |||||||| ||||||||||||||||    
T  3279763 tctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattcattgct 3279823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 17993789 - 17993736
Alignment:
Q  10 actatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgct 63  Q
    ||||||| |||||||| |||||||| || |||||||| ||||||||||| ||||    
T  17993789 actatgcttcttcttcattttgtttagacgaacttgtccacatcattcaatgct 17993736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 58394 - 58245
Alignment:
Q  3 tctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttg 102  Q
    |||||||||||||| |||||||| ||||| ||| | |||||||| ||||||||||| |||| |  |  | | || ||| |  |||||||  |||||| ||    
T  58394 tctatcaactatgcttcttcttcattttgcttgaacgaacttgtccacatcattcactgcttcgaggaatatgggcgcctagttttgccaattttctatg 58295  T
Q  103 gtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagca 152  Q
      |||||||||||||| |||||||||||  | || ||||| |||||||||    
T  58294 acgtggaaccttctcacgtgcgacatcaagatggaagttatggtaaagca 58245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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