View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_97 (Length: 298)
Name: NF8921_low_97
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_97 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 43011226 - 43011512
Alignment:
| Q |
1 |
catgtggttccgactttgggagaatgccatggtgtaattatttctgttcaaggggttgaatgtgagatagatgttatgctttttgagttgcgcggttatg |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43011226 |
catgtggttccgactttgggagaatgtcatggtgtaattatttctgttcaaggggttgaatgggagatagatgttatgctttttgagttgcgcggttatg |
43011325 |
T |
|
| Q |
101 |
atctagtattggggatggcatggctgacacaaattggatgtacatgcattgattgggttgagnnnnnnntgcgtttcgactatcaaggcgaatggataga |
200 |
Q |
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| T |
43011326 |
atctagtattggggatggcatggctgacacaaattggatgtacttgcatcgattgggttgagaaaaaaatgcgtttcgactatcaaggcgaatggataga |
43011425 |
T |
|
| Q |
201 |
gatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgcattgtgatgtcca |
287 |
Q |
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| T |
43011426 |
gatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgcattgtgatgtcca |
43011512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 43013523 - 43013809
Alignment:
| Q |
1 |
catgtggttccgactttgggagaatgccatggtgtaattatttctgttcaaggggttgaatgtgagatagatgttatgctttttgagttgcgcggttatg |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43013523 |
catgtggttccgactttgggagaatgtcatggtgtaattatttctgttcaaggggttgaatgggagatagatgttatgctttttgagttgcgcggttatg |
43013622 |
T |
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| Q |
101 |
atctagtattggggatggcatggctgacacaaattggatgtacatgcattgattgggttgagnnnnnnntgcgtttcgactatcaaggcgaatggataga |
200 |
Q |
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| T |
43013623 |
atctagtattggggatggcatggctgacacaaattggatgtacttgcatcgattgggttgagaaaaaaatgcgtttcgactatcaaggcgaatggataga |
43013722 |
T |
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| Q |
201 |
gatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgcattgtgatgtcca |
287 |
Q |
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| T |
43013723 |
gatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgcattgtgatgtcca |
43013809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 9 - 287
Target Start/End: Complemental strand, 25203257 - 25202979
Alignment:
| Q |
9 |
tccgactttgggagaatgccatggtgtaattatttctgttcaaggggttgaatgtgagatagatgttatgctttttgagttgcgcggttatgatctagta |
108 |
Q |
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||||||| ||||||| ||||| ||| ||||||||| |||||| |||| |||| ||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
25203257 |
tccgactatgggagagtgccacaatgttattatttctcttcaagtggttaaatgggagatagatgttatgctttttgagtagggcggttatgatctagta |
25203158 |
T |
|
| Q |
109 |
ttggggatggcatggctgacacaaattggatgtacatgcattgattgggttgagnnnnnnntgcgtttcgactatcaaggcgaatggatagagatcagag |
208 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||| |||||||||||| || ||||||||||||| || |||||||| ||||||| || |
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| T |
25203157 |
ttggggatggcatgactgacacaaattggatgtacttgcatcgattgggttgagaaaaaaatgtgtttcgactatcagggtgaatggattgagatcatag |
25203058 |
T |
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| Q |
209 |
gaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgcattgtgatgtcca |
287 |
Q |
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| T |
25203057 |
gtattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggttagttgcattgtgatgtcca |
25202979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 35075269 - 35075411
Alignment:
| Q |
1 |
catgtggttccgactttgggagaatgccatggtgtaattatttctgttcaaggggttgaatgtgagatagatgttatgctttttgagttgcgcggttatg |
100 |
Q |
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||||||| ||| ||||||||||||||||||||||| |||| || |||||||||||||||||| ||||||||| ||| ||||||||||||| ||||||||| |
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| T |
35075269 |
catgtggctccaactttgggagaatgccatggtgttattaattttgttcaaggggttgaatgggagatagatcttaagctttttgagttgggcggttatg |
35075368 |
T |
|
| Q |
101 |
atctagtattggggatggcatggctgacacaaattggatgtac |
143 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35075369 |
atctagtattggggatggcatggctgacacaaattggatgtac |
35075411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 215 - 287
Target Start/End: Original strand, 35075408 - 35075480
Alignment:
| Q |
215 |
gtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgcattgtgatgtcca |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35075408 |
gtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggtcagttgcattgtgatgtcca |
35075480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 25676142 - 25675856
Alignment:
| Q |
1 |
catgtggttccgactttgggagaatgccatggtgtaattatttctgttcaaggggttgaatgtgagatagatgttatgctttttgagttgcgcggttatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25676142 |
catgtggttccgactttgggagaatgtcatggtgtaattatttctgttcaaggggttgaatgggagatagatgttatgctttttgagttgcgcggttatg |
25676043 |
T |
|
| Q |
101 |
atctagtattggggatggcatggctgacacaaattggatgtacatgcattgattgggttgagnnnnnnntgcgtttcgactatcaaggcgaatggataga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25676042 |
atctagtattggggatggcatggctgacacaaattggatgtacttgcatcgattgggttgagaaaaaaatgcgtttcgactatcaaggcgaatggataga |
25675943 |
T |
|
| Q |
201 |
gatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgcattgtgatgtcca |
287 |
Q |
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| T |
25675942 |
gatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgcattgtgatgtcca |
25675856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 4 - 287
Target Start/End: Complemental strand, 15090451 - 15090163
Alignment:
| Q |
4 |
gtggttccgactttgggagaatgccatggtgtaattatttctgttcaaggggttgaatgtgagatagatgttatgctttttgagttgcgcggttatgatc |
103 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| |
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| T |
15090451 |
gtggctccgactttgggagaatgccatggtgttattatttctgttcaaggggttgaatgggagatagatattatgctttttgagttgggcggttatgatc |
15090352 |
T |
|
| Q |
104 |
tagtattggggatggcatggctgacacaaattggatgtacatgcattgattgggttgag-------nnnnnnntgcgtttcgactatcaaggcgaatgga |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||||||||||| || ||||||| |
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| T |
15090351 |
tagtattggggatggcatggctgacacaaattggatgtacttgcatcgattgggttgagaaaaaaaaaaaaaaagtgtttcgactatcagggtgaatgga |
15090252 |
T |
|
| Q |
197 |
tagagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgcattgtgatgtcca |
287 |
Q |
| |
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| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15090251 |
ttgagatcagaggaattcgtact--agagtgcaatccattacaaaactatgttgatgaaaatcattttggccagttgcattgtgatgtcca |
15090163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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