View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_98 (Length: 292)
Name: NF8921_low_98
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_98 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 32272380 - 32272651
Alignment:
| Q |
1 |
ttgtaagaagggagtggtggcatgattggttttgttttgattgaattgtggtattggagaatggctgtggttgtggtgttatcgaacggtgcattttggg |
100 |
Q |
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| T |
32272380 |
ttgtaagaagggagtggtggcatgattggttttgttttgattgaattgtggtattggagaatggctgtggttgtggtgttatcgaacggtgcattttggg |
32272479 |
T |
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| Q |
101 |
cggattgataggcgcgtgcagctatgtagtatttggaaggtggttggtttgcgtgtattaagacatcggtggtttggccgggtcctaacatgaggatgtt |
200 |
Q |
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| T |
32272480 |
cggattgataggcgcgtgcagctatgtagtatttggaaggtggttggtttgcgtgtattaagacatcggtggtttggccgggtcctaacatgaggatgtt |
32272579 |
T |
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| Q |
201 |
ggtggtgaagggtttaacgtaagaggcatctgcgccaaccacggttagtttgtggttggcaattgtgaagaa |
272 |
Q |
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| T |
32272580 |
ggtggtgaagggtttaacgtaagaggcatctgcgccaaccacggttagtttgtggttggcaattgtgaagaa |
32272651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 58 - 272
Target Start/End: Original strand, 35991665 - 35991879
Alignment:
| Q |
58 |
agaatggctgtggttgtggtgttatcgaacggtgcattttgggcggattgataggcgcgtgcagctatgtagtatttggaaggtggttggtttgcgtgta |
157 |
Q |
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| T |
35991665 |
agaatggcagtggttgttgtgttatcgaatgcagcgttttgagctgattggtaagcgcgtccggcgatgtagtatcttgatggtggttggtcaccttgga |
35991764 |
T |
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| Q |
158 |
ttaagacatcggtggtttggccgggtcctaacatgaggatgttggtggtgaagggtttaacgtaagaggcatctgcgccaaccacggttagtttgtggtt |
257 |
Q |
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| T |
35991765 |
tgagaacatcagtggtttggccaggtcctaacatgaggacattggttgtgaatggtttgacataggaagcatcagcacctactactgttagtttatggtt |
35991864 |
T |
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| Q |
258 |
ggcaattgtgaagaa |
272 |
Q |
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|||||||||||||| |
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| T |
35991865 |
tgcaattgtgaagaa |
35991879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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