View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8922_high_1 (Length: 684)
Name: NF8922_high_1
Description: NF8922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8922_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 296 - 669
Target Start/End: Complemental strand, 43475724 - 43475351
Alignment:
| Q |
296 |
cttacttgcaatacacgtttatgatgaaaccaaattctatattcacaacaacaataatagctactaaatacttatttaataacatagatccctactctaa |
395 |
Q |
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| T |
43475724 |
cttacttgcaatacacgtttatgatgaaaccaaattctatattcacaacaacaataatagctactaaatacttatttaataacatagatccctactctaa |
43475625 |
T |
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| Q |
396 |
catagttatgatatgattctaaactccaacagtaacctcacatgatgcaaattcaactgtagtagaactaaaaggaggtacatgatcatttgcaggatga |
495 |
Q |
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| T |
43475624 |
catagttatgatatgattctaaactccaacagtaacctcacatgatgcaaattcaactgtagtagaactaaaaggaggtacatgatcatttgcaggatga |
43475525 |
T |
|
| Q |
496 |
tctgtctctgattgttgctccatgtcagaattgtttacatgtggatgtaggcattcttcattgcttcctttggttacattttcttgagacttcaccttgg |
595 |
Q |
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| T |
43475524 |
tctgtctctgattgttgctccatgtcagaattgtttacatgtggatgtaggcattcttcattgcttcctttggttacattttcttgagacttcaccttgg |
43475425 |
T |
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| Q |
596 |
tttggattttcttgattggtttctttgaattcacatctttatgaccttttatgattttttccttggttgaattt |
669 |
Q |
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| T |
43475424 |
tttggattttcttgattggtttctttgaattcacatctttatgaccttttatgattttttccttggttgaattt |
43475351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 274
Target Start/End: Complemental strand, 43476022 - 43475764
Alignment:
| Q |
16 |
ttttgattaggaaaacaaagaaaaataataattttaaaccgttggtagctcaatgatttggggaataaatgcttgaatgttggctctaaaggaccataac |
115 |
Q |
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| T |
43476022 |
ttttgattaggaaaacaaagaaaaaaaaaatttttaaaccgttggtagctcaatgatttggggaataaatgcttgaatgttggctctaaaggaccataac |
43475923 |
T |
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| Q |
116 |
aagatgtatttagttaccttaccataaacttcaaaggggaccattctaaatgcagtgtagaaagggcaatcagatgtcaaatagtaatacacaaatggtt |
215 |
Q |
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| T |
43475922 |
aagatgtatttagttaccttaccataaacttcaaaggggaccattctaaatgcagtgtagaaagggcaatcagatgtcaaatagtaatacacaaatggtt |
43475823 |
T |
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| Q |
216 |
tattaaataataaatgaattataaaggcattttaaacggatatcacaaaagggcaactc |
274 |
Q |
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| T |
43475822 |
tattaaataataaatgaattataaaggcattttaaacggatatcacaaaagggcaactc |
43475764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 589 - 646
Target Start/End: Original strand, 24261317 - 24261374
Alignment:
| Q |
589 |
accttggtttggattttcttgattggtttctttgaattcacatctttatgacctttta |
646 |
Q |
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| T |
24261317 |
accttggcttgagtttttttgattggtttctttgaactcacatctttatagcctttta |
24261374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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