View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8922_high_2 (Length: 535)
Name: NF8922_high_2
Description: NF8922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8922_high_2 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 519
Target Start/End: Complemental strand, 38275639 - 38275135
Alignment:
| Q |
18 |
aggcactgcaagatacaagggaactttttcagcgttactgtgatgagaaagggataaaattacttcaagatctgcatctgcacttgtatggggtctttta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38275639 |
aggcactgcaagatacaagggaactttttcagcgttactgtgatgagaaagggataaaattacttcaagatctgca------cttgtatggggtctttta |
38275546 |
T |
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| Q |
118 |
tatgtgaaacctgtgatcacattgcagaatattcaatttcttatttatcgccaaaggctctcctatctttcgaactaaattgttgatttcataactctaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38275545 |
tatgtgaaacctgtgatcacattgcagaatattcaatttcttatttatcgccaaaggctctcctatctttcgaactaaattgttgatttcataactctaa |
38275446 |
T |
|
| Q |
218 |
tttctagctggtgagtttttccttatccttataatttttatgcattttcccccctttcgttatcaaagatatatttattttctcaacagtcggtaagatg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38275445 |
tttctagctggtgagtttttccttatccttataatttttatgcattttcccccctttcgttatcaaagatatatttattttctcaacagtcggtaagatg |
38275346 |
T |
|
| Q |
318 |
tttgttatccacgtctctaggtgtcaatgtattttgtgtgttcactgtcatgcttttagaattgagatgtctgagatgattcaaggaagaatggatgatg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38275345 |
tttgttatccacgtctctaggtgtcaatgtattttgtgtgttcactgtcatgcttttagaattgagatgtctgagatgattcaaggaagaatggatgatg |
38275246 |
T |
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| Q |
418 |
tggttatagttttcggttctcttttatttcatcaaattcccttgtttgtgtgtgaggctacggtacaattg---------aactcgatcctttctcttcg |
508 |
Q |
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| T |
38275245 |
tggttatagttttcggttctcttttatttcatcaaattcccttgtttgtgtgtgaggctacggtacaattgaactaattgaactcgatcctttctcttcg |
38275146 |
T |
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| Q |
509 |
tctattctctt |
519 |
Q |
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||||||||||| |
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| T |
38275145 |
tctattctctt |
38275135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 307 - 413
Target Start/End: Complemental strand, 36870555 - 36870449
Alignment:
| Q |
307 |
tcggtaagatgtttgttatccacgtctctaggtgtcaatgtattttgtgtgttcactgtcatgcttttagaattgagatgtctgagatgattcaaggaag |
406 |
Q |
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||||||||||||||||| | |||||||||||||||||||| |||| |||||| |||| ||||||||||| |||||| ||||||||||| |||||||| |
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| T |
36870555 |
tcggtaagatgtttgttcttcacgtctctaggtgtcaatgcatttcaagtgttctctgttatgcttttagatttgagaattctgagatgatgcaaggaag |
36870456 |
T |
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| Q |
407 |
aatggat |
413 |
Q |
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||||||| |
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| T |
36870455 |
aatggat |
36870449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 8964863 - 8964798
Alignment:
| Q |
18 |
aggcactgcaagatacaagggaactttttcagcgttactgtgatgagaaagggataaaattacttc |
83 |
Q |
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|||||| |||||| |||| ||||||||||||| |||||| |||||||||| |||| |||||||||| |
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| T |
8964863 |
aggcaccgcaagagacaaaggaactttttcagtgttactctgatgagaaaaggatgaaattacttc |
8964798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 37962355 - 37962416
Alignment:
| Q |
192 |
ctaaattgttgatttcataactctaatttctagctggtgagtttttccttatccttataatt |
253 |
Q |
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| T |
37962355 |
ctaaattgttggattgataactctaattgctagctggtgagttttaccttatccttttaatt |
37962416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 20392 - 20455
Alignment:
| Q |
190 |
aactaaattgttgatttcataactctaatttctagctggtgagtttttccttatccttataatt |
253 |
Q |
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|||| |||||||| ||||||||||||||| |||||||||||||||| ||||||||| ||||| |
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| T |
20392 |
aactgaattgttggattcataactctaattgctagctggtgagttttatcttatccttttaatt |
20455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 16430410 - 16430473
Alignment:
| Q |
190 |
aactaaattgttgatttcataactctaatttctagctggtgagtttttccttatccttataatt |
253 |
Q |
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| T |
16430410 |
aactgaattgttggattcataactctaattgctagctggtgagttttatcttatccttttaatt |
16430473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 454 - 519
Target Start/End: Complemental strand, 20595184 - 20595119
Alignment:
| Q |
454 |
ttcccttgtttgtgtgtgaggctacggtacaattgaactcgatcctttctcttcgtctattctctt |
519 |
Q |
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|||||||||| ||||||||||||| ||| ||||||| ||||| ||||||| ||||||||||||| |
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| T |
20595184 |
ttcccttgttggtgtgtgaggctatggtgtaattgaattcgattctttctcgccgtctattctctt |
20595119 |
T |
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