View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8922_low_11 (Length: 444)
Name: NF8922_low_11
Description: NF8922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8922_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 99 - 428
Target Start/End: Complemental strand, 27540993 - 27540647
Alignment:
| Q |
99 |
gatcctcaaatcttggcccaattttttatgagatgatgctcttcaatttggttataaatc---------gtgtcacgatgtacataaatcgtgacacgag |
189 |
Q |
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| T |
27540993 |
gatcctcaaatcttggcccaattttttgcgagatgatgctcttcaatttggttataaatcatgccacgagtgtcacgatgtacaaaaatcgtgacacgag |
27540894 |
T |
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| Q |
190 |
tgttgctctccatgtctcctcattttctgttcgcttcaaaaccatttaaaatcgtccgaactctactaaaaatgcat-aaaacaactaacaaaataacat |
288 |
Q |
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| T |
27540893 |
tgttgctctccgtgtctcctcattttctgttcgcttcaaaaccatttaaaatcgtccgaactctactaaaaatgcataaaaacaactaacaaaataacat |
27540794 |
T |
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| Q |
289 |
atgagagctttatatttggttttggcgcaaaaattactctatg-------ttctttactagaaactgaactttggtgattttacacgaattgaagattgc |
381 |
Q |
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| T |
27540793 |
atgagagctttatatttggttttggtgcaaaaatgactctatgttctgtattctatactagaaactgaactttggtgattttacacgaattgaagattgc |
27540694 |
T |
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| Q |
382 |
ttggagtagagattttaggaatattcaagtgtacgcagactcataga |
428 |
Q |
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| T |
27540693 |
ttggagtagagattttaggaatattcaagtgtacgcagactcataga |
27540647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 414
Target Start/End: Complemental strand, 42030562 - 42030441
Alignment:
| Q |
294 |
agctttatatttggttttggcgcaaaaattactctatgttctttactagaaactgaacttt-ggtgattttacacgaattgaagattgcttggagtagag |
392 |
Q |
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| T |
42030562 |
agctttatatatggttttgctgcaaaaattactccatgttctgttctagaagctgaactttgggggcttttacactgactgaagattgcttagagtagag |
42030463 |
T |
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| Q |
393 |
attttaggaatattcaagtgta |
414 |
Q |
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| T |
42030462 |
gttttaggaatatcaaagtgta |
42030441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 422
Target Start/End: Original strand, 11252051 - 11252094
Alignment:
| Q |
379 |
tgcttggagtagagattttaggaatattcaagtgtacgcagact |
422 |
Q |
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| T |
11252051 |
tgcttggagtagaggttttaggaatattcaagtgtacgcagact |
11252094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 292
Target Start/End: Complemental strand, 26608594 - 26608548
Alignment:
| Q |
247 |
gaactctactaaaaatgcataaaa-caactaacaaaataacatatga |
292 |
Q |
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| T |
26608594 |
gaactctacttaaaatgcataaaaacaactaacaaaataacatatga |
26608548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 28414202 - 28414244
Alignment:
| Q |
251 |
tctactaaaaatgcataaaa-caactaacaaaataacatatga |
292 |
Q |
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| T |
28414202 |
tctactaaaaatgtataaaaacaactaacaaaataacatatga |
28414244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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