View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8922_low_12 (Length: 384)
Name: NF8922_low_12
Description: NF8922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8922_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 20590960 - 20590593
Alignment:
| Q |
1 |
tattttgtattaaaagttatgtattcaatacattaaaagtttaacaagtttcaattttgactcaaaattttctttttggcttccttaactaatgcttccg |
100 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| ||||| ||| |
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| T |
20590960 |
tattttgtattaacagttgtgtattcaatacattaaaagtttaacaagtttcaattttgactcaaaatttcctttttgactttcttaaccaatgcccccg |
20590861 |
T |
|
| Q |
101 |
ggacaccggttagcatgagaataagagaaagaggaatgtgaaatgggtatgaataattgcatagcaatgatgaaaggtggttttatgtagctagtagctt |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||| |||||||| |
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| T |
20590860 |
gggcaccggttagcatgagaataagagaaagaggaatgtgaaacgggtatgaataattgcagaacaatgatgaaaggtggttttatgtagccagtagctt |
20590761 |
T |
|
| Q |
201 |
aatcaggaaggaacaagaacatggaatgaatcatggttgagctctttgaaacaaaacaatgaaagaaatggtttttataatgatcaaaggagggtttgat |
300 |
Q |
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|| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
20590760 |
aacgaggaaggaacaagaacatggaatgaatcatggttgaactctttgaaacagaacaatgaaagaaatggtttttataatgattaaaggagggtttgat |
20590661 |
T |
|
| Q |
301 |
gaaagagtttgtttttgtagctttattgtgaaggaagctttgacattttaaatttcattgaaaaatgg |
368 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
20590660 |
gaaagggtttgtttttgtagctttattgtgaaggaagctttgacattttaaatttcatagaaaaatgg |
20590593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 20621836 - 20621471
Alignment:
| Q |
1 |
tattttgtattaaaagttatgtattcaatacattaaaagtttaacaagtttcaattttgactcaaaattttctttttggcttccttaactaatgcttccg |
100 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| |
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| T |
20621836 |
tattttatattaaaagttgtgtattcaatacattaaaagtttaaaaagtttcaattttgactcaaaatttcttttttggcttccttaaccaatgcccccg |
20621737 |
T |
|
| Q |
101 |
ggacaccggttagcatgagaataagagaaagaggaatgtgaaatgggtatgaataattgcatagcaatgatgaaaggtggttttatgtagctagtagctt |
200 |
Q |
| |
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| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||| |||||||||| | |||||| |
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| T |
20621736 |
gagcaccggctagcatgagaataagagaaagaggaatgtgaaacgggtatgaataattgcagaacaatgatgaaaggtgg-tttatgtagccaatagctt |
20621638 |
T |
|
| Q |
201 |
aatcaggaaggaacaagaacatggaatgaatcatggttgagctctttgaaacaaaacaatgaaagaaatggtttttataatgatcaaaggagggtttgat |
300 |
Q |
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||| ||||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20621637 |
aatgaggaaggaacaagaaaatggaatgaataatggtgaagctctttgaaacataacaatgaaagaaatggttttgataatgatcaaaggagggtttgat |
20621538 |
T |
|
| Q |
301 |
gaaagagtttgtttttgtagctttattgtgaaggaagctttgacattttaaatttcattgaaaaatgg |
368 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20621537 |
gaaagagtttgtttttgtag-tttattgtgaaggaagctttgacattttaaatttcattgaaaaatgg |
20621471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 12057471 - 12057837
Alignment:
| Q |
1 |
tattttgtattaaaagttatgtattcaatacattaaaagtttaacaagtttcaattttgactcaaaattttctttttggcttccttaactaatgcttccg |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||| ||||| | | |
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| T |
12057471 |
tattttgtattaaaagttgtgtattcaatacattaaaagtttaaaaagtttcaattttgactcaaaatttcctttttggcttctttaaccaatgcccctg |
12057570 |
T |
|
| Q |
101 |
ggacaccggttagcatgagaataagagaaagaggaatgtgaaatgggtatgaataattgcatagcaatgatgaaaggtggttttatgtagctagtagctt |
200 |
Q |
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|| ||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||| ||||||||||||||| | |||||| |
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| T |
12057571 |
gg-cacagactagcatgagaataagagaaagaggaatgtgaaacgggtatgaataattgcaaaacaatgatgaaacgtggttttatgtagccaatagctt |
12057669 |
T |
|
| Q |
201 |
aatcaggaaggaacaagaacatggaatgaatcatggttgagctctttgaaacaaaacaatgaaagaaatggtttttataatgatcaaaggagggtttgat |
300 |
Q |
| |
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||| ||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| ||| |
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| T |
12057670 |
aatgaggaaggaacaagaaaatggaatgaataatggttgagctctttgaaacagaacaataaaagaaatggttttgataatgatcaaaggagggttagat |
12057769 |
T |
|
| Q |
301 |
gaaagagtttgtttttgtagctttattgtgaaggaagctttgacattttaaatttcattgaaaaatgg |
368 |
Q |
| |
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||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12057770 |
gaaagagtttgtttttgtagctttaatgtaaaggaagctttgacattttaaatttcattgaaaaatgg |
12057837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 12053421 - 12053558
Alignment:
| Q |
1 |
tattttgtattaaaagttatgtattcaatacattaaaagtttaacaagtttcaattttgactcaaaattttctttttggcttccttaactaatgcttccg |
100 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||| |||| ||||||||||||| ||||| || |
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| T |
12053421 |
tattttgtcttaaaagttgtgtattcaatacattaaaagtttaaaaagttttaattttgactcaaaatttcctttctggcttccttaaccaatgccctcg |
12053520 |
T |
|
| Q |
101 |
ggacaccggttagcatgagaataagagaaagaggaatg |
138 |
Q |
| |
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|| |||||| |||||||||||||||||||||||||||| |
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| T |
12053521 |
gggcaccggctagcatgagaataagagaaagaggaatg |
12053558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31939008 - 31938965
Alignment:
| Q |
1 |
tattttgtattaaaagttatgtattcaatacattaaaagtttaa |
44 |
Q |
| |
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||||||| |||||||||| |||| |||||||||||||||||||| |
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| T |
31939008 |
tattttgcattaaaagttgtgtaatcaatacattaaaagtttaa |
31938965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 20869362 - 20869448
Alignment:
| Q |
4 |
tttgtattaaaagttatgtattcaatacattaaaagtttaacaagtttcaattttgactcaaaattttct-ttttggcttccttaac |
89 |
Q |
| |
|
|||| ||| |||||| |||| ||||| ||||||||| |||| |||| ||| |||| | | |||||||||| |||||||||||||||| |
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|
| T |
20869362 |
tttgcattgaaagttgtgtaatcaatgcattaaaagcttaaaaagtgtcatttttaaattaaaattttctcttttggcttccttaac |
20869448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 27299736 - 27299693
Alignment:
| Q |
68 |
ttttctttttggcttccttaactaatgcttccgggacaccggtta |
112 |
Q |
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|||| ||||||| ||||||||||||||| |||||||||||||||| |
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| T |
27299736 |
ttttttttttggattccttaactaatgc-tccgggacaccggtta |
27299693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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