View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8922_low_14 (Length: 362)
Name: NF8922_low_14
Description: NF8922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8922_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 3650979 - 3651305
Alignment:
| Q |
18 |
tgttgaatacgtaagtagtcatatctttctatataggatgttatcacctccacaaaattcattgattaagatgctgattcttcatctatttacttttagg |
117 |
Q |
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| T |
3650979 |
tgttgaatacgtaagtagtcatatctttctatatatgatgttatcacctccacaaaattcattgattaagatgctgattcttcatctatttacttttagg |
3651078 |
T |
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| Q |
118 |
ggatggttgttttgccaagcatgtttggccatgactttggggacgaacttggtcgctacgcagtgttggtggaccgtaactccaacgagtttgaggtttt |
217 |
Q |
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| T |
3651079 |
ggatggttgttttgccaagcatgtttggccatgactttggggacgaacttggtcgctacgcagtgttggtggaccgtaactccaatgagtttgaggtttt |
3651178 |
T |
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| Q |
218 |
ggtagagagaaacaatggcagatgcattggttttgatcatatgaaaatgattaaattatttgtatgaagaagatattatttgcagcgatagaaacgaata |
317 |
Q |
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| T |
3651179 |
ggtagagagaaacaatggcagatgcattggttttgatcatatgaaaatgattaaattatttgtatgaagaagatattatttgcagcaat-gaaacgaata |
3651277 |
T |
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| Q |
318 |
taattagcttaaaattattatgagaact |
345 |
Q |
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| T |
3651278 |
taattagcttaaaattattatgagaact |
3651305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 38467051 - 38466933
Alignment:
| Q |
117 |
gggatggttgttttgccaagcatgtttggccatgactttggggacgaacttggtcgctacgcagtgttggtggaccgtaactccaacgagtttgaggttt |
216 |
Q |
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| T |
38467051 |
gggatggttgtattgccaaccctttttggtcatgactttggggatgaacttggtcgatatgctatgttggtggaccgtaactacaacgaatttgaggttt |
38466952 |
T |
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| Q |
217 |
tggtagagagaaacaatgg |
235 |
Q |
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| T |
38466951 |
tggttgagagaaacaatgg |
38466933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 234
Target Start/End: Original strand, 10196590 - 10196752
Alignment:
| Q |
72 |
aaattcattgattaagatgctgattcttcatctatttacttttaggggatggttgttttgccaagcatgtttggccatgactttggggacgaacttggtc |
171 |
Q |
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| T |
10196590 |
aaattcatttattaacattttgtttcttcttttattgactattagggcatggttgtttcgctaagaatctttggtcatgactttgggggccaaattggac |
10196689 |
T |
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| Q |
172 |
gctacgcagtgttggtggaccgtaactccaacgagtttgaggttttggtagagagaaacaatg |
234 |
Q |
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| T |
10196690 |
gctacgcaaggttggtggattctaactataatgagttcgaggttttggtcgagaggaacaatg |
10196752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 19462449 - 19462519
Alignment:
| Q |
106 |
tttacttttaggggatggttgttttgccaagcatgtttggccatgactttggggacgaacttggtcgctac |
176 |
Q |
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| T |
19462449 |
tttactattagggcatagttgttttgccaagaatgtttggccatgactttggagaccaaattggacgctac |
19462519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 35349683 - 35349772
Alignment:
| Q |
147 |
catgactttggggacgaacttggtcgctacgcagtgttggtggaccgtaactccaacgagtttgaggttttggtagagagaaacaatggc |
236 |
Q |
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| T |
35349683 |
catgactttggggatgaacttggtcgatatgctatgttggtggactgtaactacaacgaatttgaggttttggttgagcgaaacaatggc |
35349772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 234
Target Start/End: Complemental strand, 31941891 - 31941764
Alignment:
| Q |
106 |
tttacttttaggggatggttgttttgccaagcatgtttggccatgactttggggacgaacttggtcgctacgcagtgttggtggaccgtaactccaacga |
205 |
Q |
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|||||| |||||| ||| ||||||||| ||| |||||||| ||||||||||| ||| || |||| ||||| ||| ||||||| ||||| ||| || |
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| T |
31941891 |
tttactattagggaatg-ttgttttgcgaagaatgtttggtcatgactttggagaccaaattggacgctatgcaagtctggtggattctaactacaatga |
31941793 |
T |
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| Q |
206 |
gtttgaggttttggtagagagaaacaatg |
234 |
Q |
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| T |
31941792 |
gtttgaggtgttggtcgagaggaacaatg |
31941764 |
T |
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