View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8922_low_16 (Length: 353)
Name: NF8922_low_16
Description: NF8922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8922_low_16 |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 15475605 - 15475955
Alignment:
| Q |
1 |
tagtatgcttgtgagaggccatttatgtgataatcatatgtatgtcctttctgatgatatttcaaatgggaaggagaatattggtgtgaggctatataat |
100 |
Q |
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| T |
15475605 |
tagtatgcttatgagaggccatttatgtgataatcatatgtgtgtcctttctgatgatatttccaatgggaaggagaatattggtgtgaggctatataat |
15475704 |
T |
|
| Q |
101 |
gacattgatagtgatctctatcctatgcaatttgagtatctcccgaaggcggcatttccaatgttcttgcttcctcatagtatgacgacaacgaaaaaga |
200 |
Q |
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| T |
15475705 |
gacattgatagtgatctctatcctatgcaatttgagtatctcccgaaagcggcatttccaatgttcttgcttcctcaaagtatgacgacgaggaaaaaga |
15475804 |
T |
|
| Q |
201 |
tgagggtgatagagtgttctgaatgcgttgatggatgtgtttcttcaatcatgaatggcaacactaccccttatagtaaaagtgggattcttttgaaagg |
300 |
Q |
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| T |
15475805 |
tgagggtgatagagtgttctgaatgcgttgatggatgtgtttcttcaatcatgaatggcaacactaccccttatagtaaaagtgggattcttttgaaagg |
15475904 |
T |
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| Q |
301 |
gaggtcattgatttatgaatgtggtccattttgtagatgtccatctcattg |
351 |
Q |
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| T |
15475905 |
gaggtcgttaatttatgaatgcggtcctttttgtagctgtccttcgcattg |
15475955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 2 - 351
Target Start/End: Complemental strand, 15168147 - 15167798
Alignment:
| Q |
2 |
agtatgcttgtgagaggccatttatgtgataatcatatgtatgtcctttctgatgatatttcaaatgggaaggagaatattggtgtgaggctatataatg |
101 |
Q |
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| T |
15168147 |
agtatgcttatgagaggccatttatgtgataatcatatgtatgtcctttctgatgatatttccaatgggaaggagaatatcggtgtgaggttatattatg |
15168048 |
T |
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| Q |
102 |
acattgatagtgatctctatcctatgcaatttgagtatctcccgaaggcggcatttccaatgttcttgcttcctcatagtatgacgacaacgaaaaagat |
201 |
Q |
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| T |
15168047 |
agattgatagtgatctctatcctatgcaatttgagtatctcccaaaggcggcatttccaatgttgttgcttcctcaaagtatgacgacgaggaaaaagat |
15167948 |
T |
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| Q |
202 |
gagggtgatagagtgttctgaatgcgttgatggatgtgtttcttcaatcatgaatggcaacactaccccttatagtaaaagtgggattcttttgaaaggg |
301 |
Q |
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| T |
15167947 |
gagggtgatagagtgttctgaatgcgttgatggatgtgtttcttcaatcatgaatagcaacactaccccttatagtaaaagtgggattcttttgaaaggg |
15167848 |
T |
|
| Q |
302 |
aggtcattgatttatgaatgtggtccattttgtagatgtccatctcattg |
351 |
Q |
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| T |
15167847 |
aggtctttgatttatgaatgtggtcctttttgtagctgtccttcgcattg |
15167798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 3 - 342
Target Start/End: Original strand, 23253323 - 23253660
Alignment:
| Q |
3 |
gtatgcttgtgagaggccatttatgtgataatcatatgtatgtcctttctgatgatatttcaaatgggaaggagaatattggtgtgaggctatataatga |
102 |
Q |
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|||||||| ||||||||| |||||||||| || |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23253323 |
gtatgcttaagagaggccaattatgtgata-tcctatgtatgtcctttatgatgatatttccaatgggaaggagaatattggtgtgaggctatataatga |
23253421 |
T |
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| Q |
103 |
cattgatagtgatctctatcctatgcaatttgagtatctcccgaaggcggcatttccaatgttcttgcttcctcatagtatgacgacaacgaaaaagatg |
202 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| |||||||| |||| ||||||||||| | |||||||||| |
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| T |
23253422 |
cattgatagtgatct-tatcctatgcaatttgagtatctcctgaaggcggaatttccaatgctcttgcttgctcaaagtatgacgacgaagaaaaagatg |
23253520 |
T |
|
| Q |
203 |
agggtgatagagtgttctgaatgcgttgatggatgtgtttcttcaatcatgaatggcaacactaccccttatagtaaaagtgggattcttttgaaaggga |
302 |
Q |
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|||| ||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23253521 |
agggcgatagagtgctctgaatgtgttgatggatgcgtttcttcaatcataaatggcaacactaccccttatagtaaaagtgggattcttttgaaaggga |
23253620 |
T |
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| Q |
303 |
ggtcattgatttatgaatgtggtccattttgtagatgtcc |
342 |
Q |
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| T |
23253621 |
tgtcgttgatttatgaatgcggtcctttttgtagttgtcc |
23253660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 37 - 342
Target Start/End: Complemental strand, 9209 - 8904
Alignment:
| Q |
37 |
tatgtatgtcctttctgatgatatttcaaatgggaaggagaatattggtgtgaggctatataatgacattgatagtgatctctatcctatgcaatttgag |
136 |
Q |
| |
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||||||||| ||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||| ||| |
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| T |
9209 |
tatgtatgttatttctcatgatatttccaatgggaaggagaatattggtgtgagtttatataatgacattgataatgatcaatatcctatgcaattcgag |
9110 |
T |
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| Q |
137 |
tatctcccgaaggcggcatttccaatgttcttgcttcctcatagtatgacgacaacgaaaaagatgagggtgatagagtgttctgaatgcgttgatggat |
236 |
Q |
| |
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|||||||||||||| || ||||| ||| || | ||||| || ||||| |||| | | || ||||| || |||||||||||||| ||||||||||| |
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| T |
9109 |
tatctcccgaaggctgcttttccgcaattcgtgttgcctcagagcatgacaacaagggagtcgaggagggcgaaagagtgttctgaatccgttgatggat |
9010 |
T |
|
| Q |
237 |
gtgtttcttcaatcatgaatggcaacactaccccttatagtaaaagtgggattcttttgaaagggaggtcattgatttatgaatgtggtccattttgtag |
336 |
Q |
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| |||| ||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||| |
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| T |
9009 |
gcatttcatcaatcaagaatggcaacacttttccttatagtaaaagtgggattcttctgaaagggaggtcattaatttatgaatgcggtcctttttgtag |
8910 |
T |
|
| Q |
337 |
atgtcc |
342 |
Q |
| |
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||||| |
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|
| T |
8909 |
ttgtcc |
8904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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