View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8922_low_17 (Length: 349)
Name: NF8922_low_17
Description: NF8922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8922_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 27080912 - 27080600
Alignment:
| Q |
18 |
accatgagaccaatattggaagaagcgcatagcttagcaagaaaatgattacaattattttcttctcagagagtgtgggtgatgcagacatgccaatttt |
117 |
Q |
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| T |
27080912 |
accatgagaccaatattggaagaagcgcatagcttagcaagaaaatgattacaattattttcttctcagacagtgtgggtgatgcagacatgccaatttt |
27080813 |
T |
|
| Q |
118 |
gatgtagaagataatttatgcctttgatcaatgtagcaaatttgtgaaattttggagtttgatcttgaagaagaacaatgaaatgtaaagagtcggtgaa |
217 |
Q |
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|||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27080812 |
gatgta-aagattttttatgcctttgattaatgtagcaaatttgtgaaattttggagtttgatcttgaagaagaacaatgaaatgtaaagagtctgtgaa |
27080714 |
T |
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| Q |
218 |
acaaatgacttcatggtggtgcatatgtctagacaataagagtccttgataaatgacataaaactcaacatgaagaattttagaagattctaaaaggagt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
27080713 |
acaaatgacttcatggtggtgcatatgtctagacaataagagtccctgataaatgacataaagctcaacatgaagaattttagaagattctaaaaggaat |
27080614 |
T |
|
| Q |
318 |
catgagaaacgtga |
331 |
Q |
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|||||||||||||| |
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| T |
27080613 |
catgagaaacgtga |
27080600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 27148745 - 27149057
Alignment:
| Q |
18 |
accatgagaccaatattggaagaagcgcatagcttagcaagaaaatgattacaattattttcttctcagagagtgtgggtgatgcagacatgccaatttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27148745 |
accatgagaccaatattggaagaagcgcatagcttagcaagaaaatgattacaattattttcttctcagacagtgtgggtgatgcagacatgccaatttt |
27148844 |
T |
|
| Q |
118 |
gatgtagaagataatttatgcctttgatcaatgtagcaaatttgtgaaattttggagtttgatcttgaagaagaacaatgaaatgtaaagagtcggtgaa |
217 |
Q |
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|||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27148845 |
gatgta-aagattttttatgcctttgattaatgtagcaaatttgtgaaattttggagtttgatcttgaagaagaacaatgaaatgtaaagagtctgtgaa |
27148943 |
T |
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| Q |
218 |
acaaatgacttcatggtggtgcatatgtctagacaataagagtccttgataaatgacataaaactcaacatgaagaattttagaagattctaaaaggagt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
27148944 |
acaaatgacttcatggtggtgcatatgtctagacaataagagtccctgataaatgacataaagctcaacatgaagaattttagaagattctaaaaggaat |
27149043 |
T |
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| Q |
318 |
catgagaaacgtga |
331 |
Q |
| |
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|||||||||||||| |
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| T |
27149044 |
catgagaaacgtga |
27149057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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