View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8922_low_20 (Length: 334)
Name: NF8922_low_20
Description: NF8922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8922_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 14 - 319
Target Start/End: Complemental strand, 6241233 - 6240925
Alignment:
| Q |
14 |
cctgtgacaattgaggcaaagcgtgatgagctgacc---cttgagggtatcaagcagttttatgtcaacattgacgaggaaaagtggaagctagagacat |
110 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
6241233 |
cctgtgacaattcaggcaaagcgtgatgagctgaccacccttgagggtatcaagcagttttatgtcaacgttgacgaggaaaagtggaaactagagacat |
6241134 |
T |
|
| Q |
111 |
tatatgacatctatacgactaaattcatcactcattgcattgtttttgtgaataccgagcgcaaagtggactggctcatggacaaaatgcgaagcagata |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6241133 |
tatatgacatctatacgactaaattcatcactcattgcattgtttttgtgaataccgagcgcaaagtggactggctcatggacaaaatgcgaagcagata |
6241034 |
T |
|
| Q |
211 |
ttatacagtgtcgaccattcatgatgacatggaccagaacactagggatatcatcgtacgcgatttccagtctggttctcctcagattctcattaccacc |
310 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6241033 |
ttatacagtgttgaccattcatgatgacatggaccagaacactagggatatcatcgtacgtaatttccagtctggttctcctcagattctcattaccacc |
6240934 |
T |
|
| Q |
311 |
gaccccttg |
319 |
Q |
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||||||||| |
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| T |
6240933 |
gaccccttg |
6240925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 31 - 319
Target Start/End: Complemental strand, 6249617 - 6249329
Alignment:
| Q |
31 |
aaagcgtgatgagctgacccttgagggtatcaagcagttttatgtcaacattgacgaggaaaagtggaagctagagacattatatgacatctatacgact |
130 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||| | || ||||| | |||||||| |||||||| | ||| |||| |||| |
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| T |
6249617 |
aaagcgtgacgagctgacccttgaaggtatcaagcagttttatgtcaatgtcgataaggaagaatggaagcttgagacattgtgcgacctctacgagact |
6249518 |
T |
|
| Q |
131 |
aaattcatcactcattgcattgtttttgtgaataccgagcgcaaagtggactggctcatggacaaaatgcgaagcagatattatacagtgtcgaccattc |
230 |
Q |
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| T |
6249517 |
ctcgccatcactcaaagtgtcatttttgtgaataccaggcggaaagtggactggcttacggataagatgcgaagcagagatcatacagtctcagccactc |
6249418 |
T |
|
| Q |
231 |
atgatgacatggaccagaacactagggatatcatcgtacgcgatttccagtctggttctcctcagattctcattaccaccgaccccttg |
319 |
Q |
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||| ||||||||||||||||||||||||||||||| | || || || | |||||| ||| ||| ||||||| |||||||||| |||| |
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| T |
6249417 |
atggtgacatggaccagaacactagggatatcatcatgcgtgagtttcggtctggctcttctcgagttctcataaccaccgacctcttg |
6249329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 6226765 - 6226673
Alignment:
| Q |
129 |
ctaaattcatcactcattgcattgtttttgtgaataccgagcgcaaagtggactggctcatggacaaaatgcgaagcagatattatacagtgt |
221 |
Q |
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|||||| |||||||||||| || || |||||||||||| | |||||||||||||||||||||| | ||||||||||| || ||| ||||| |
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| T |
6226765 |
ctaaatccatcactcattgtatcgtctttgtgaataccatggacaaagtggactggctcatggacgagttgcgaagcagagatcataaagtgt |
6226673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 316
Target Start/End: Complemental strand, 6234016 - 6233830
Alignment:
| Q |
130 |
taaattcatcactcattgcattgtttttgtgaataccgagcg-caaagtggactggctcatggacaaaatgcgaagcagatattatacagtgtcgaccat |
228 |
Q |
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||||| |||||||||||| || || ||||||||||| | || ||||||||||||||||| |||||| |||||||||||| || || || ||| |
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| T |
6234016 |
taaatccatcactcattgtatcgtctttgtgaatact-atcgacaaagtggactggctcacggacaagatgcgaagcagagatcattatgt------cat |
6233924 |
T |
|
| Q |
229 |
tcatgatgacatggaccagaacactagggatatcatcgtacgcga------tttccagtctggttctcctcagattctcattaccaccgacccc |
316 |
Q |
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||||| ||||| |||||||||||||| ||||| ||| | ||| || |||| ||||||| |||||||| |||||||||||||||||||| |
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| T |
6233923 |
tcatggtgacagggaccagaacactatggataccattgaacgtgagtttcttttcgagtctggctctcctcaagttctcattaccaccgacccc |
6233830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 6226847 - 6226786
Alignment:
| Q |
59 |
atcaagcagttttatgtcaacattgacgaggaaaagtggaagctagagacattatatgacat |
120 |
Q |
| |
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||||||||||||||||| | ||||| ||||| ||||||||||||||||| ||| |||||| |
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| T |
6226847 |
atcaagcagttttatgtggatgttgacaaggaagagtggaagctagagacactatgtgacat |
6226786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 14 - 319
Target Start/End: Original strand, 17545224 - 17545547
Alignment:
| Q |
14 |
cctgtgacaattgaggcaaagcgtgatgagctgacccttgagggtatcaagcagttttatgtcaacattgacgaggaaaagtggaagctagagacattat |
113 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| | |||| ||||| ||||||||||||||||| ||| |
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| T |
17545224 |
cctgtgacaattcaggcaaagcctgatgagctgacccttgagggtatcaagcagttttatgtcgatgttgagaaggaagagtggaagctagagacactat |
17545323 |
T |
|
| Q |
114 |
atgacatct------------atacgactaaattcatcactcattgcattgtttttgtgaataccgagcgcaaagtggactggctcatggacaaaatgcg |
201 |
Q |
| |
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||||||| || |||||| ||||||||||| ||||| |||||| ||||| | |||||||||| ||||||| |||||| |||| |
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| T |
17545324 |
gcgacatctttgagctgaccgttaaagctaaatcgatcactcattgtattgtctttgtggataccaggtgcaaagtggattggctcacggacaagatgca |
17545423 |
T |
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| Q |
202 |
aagcagatattatacagtgtcgaccattcatgatgacatggaccagaacactagggatatcatcgtacgcga------tttccagtctggttctcctcag |
295 |
Q |
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||||||| || ||| |||||| ||| || |||||||||||||||||||||||||||||| || ||||| || ||||||||| |||||||| |
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| T |
17545424 |
aagcagagatcataaagtgtcagtcatccagagtgacatggaccagaacactagggatatcattgtgcgcgagttcttttcccagtctggctctcctcat |
17545523 |
T |
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| Q |
296 |
attctcattaccaccgaccccttg |
319 |
Q |
| |
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||||||||||||| ||||||||| |
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| T |
17545524 |
gttctcattaccacagaccccttg |
17545547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 42718697 - 42718777
Alignment:
| Q |
31 |
aaagcgtgatgagctgacccttgagggtatcaagcagttttatgtcaacattgacgaggaaaagtggaagctagagacatt |
111 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| || || || ||||| ||||| ||||||| ||||||||||| |
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| T |
42718697 |
aaagcgtgatgaattgacccttgagggtatcaagcagttctacgtgaatgttgacaaggaagagtggaaactagagacatt |
42718777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 17533726 - 17533680
Alignment:
| Q |
32 |
aagcgtgatgagctgacccttgagggtatcaagcagttttatgtcaa |
78 |
Q |
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|||||||||||||| ||| | ||||||||||||||||| |||||||| |
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| T |
17533726 |
aagcgtgatgagctcaccttggagggtatcaagcagttctatgtcaa |
17533680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 52329152 - 52329198
Alignment:
| Q |
32 |
aagcgtgatgagctgacccttgagggtatcaagcagttttatgtcaa |
78 |
Q |
| |
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|||||||||||||| ||| | |||||||| ||||||||||||||||| |
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|
| T |
52329152 |
aagcgtgatgagctcaccttagagggtattaagcagttttatgtcaa |
52329198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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