View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8922_low_26 (Length: 230)
Name: NF8922_low_26
Description: NF8922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8922_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 1851038 - 1850833
Alignment:
| Q |
19 |
cttacttccatcaaatattgtttccacattgtaaccactctcaaatttcaccatggatcgactatgttgcactgataaatcattttgtcatgaaattaga |
118 |
Q |
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| T |
1851038 |
cttacttccatcaaatattgtttccacattgtaaccactctcaaatttcaccatggatcgactatgttgcactgataaatcattttgtcatgaaattaga |
1850939 |
T |
|
| Q |
119 |
tcaatgttggcactttaatatagtaacaagaaaattataaactcaatggaagatactagnnnnnnnnttagtgacgaaaatttagtgaaatctgtctctg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
1850938 |
tcaatgttggcactttaatatagtaacaagaaaattataaacccaatggaagatactagaaaaaaaattagtgacgaaaatttagtgaaatctgtcactg |
1850839 |
T |
|
| Q |
219 |
cttctc |
224 |
Q |
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||||| |
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| T |
1850838 |
gttctc |
1850833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 1841302 - 1841247
Alignment:
| Q |
22 |
acttccatcaaatattgtttccacattgtaaccactctcaaatttcaccatggatc |
77 |
Q |
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|||||||| |||||| |||| ||||||||||||||||||||||||||| |||||| |
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| T |
1841302 |
acttccattgaatattctttcaacattgtaaccactctcaaatttcaccttggatc |
1841247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 26717778 - 26717835
Alignment:
| Q |
19 |
cttacttccatcaaatattgtttccacattgtaaccactctcaaatttcaccatggat |
76 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||| |
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| T |
26717778 |
cttacttccatcaaacacagtttccacattgtaaccactctcaaatttcatcatggat |
26717835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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