View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8922_low_27 (Length: 228)
Name: NF8922_low_27
Description: NF8922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8922_low_27 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 41812280 - 41812053
Alignment:
| Q |
1 |
tctgcagagttgatccctcttcctttttaccctgtaactcctccaataaatggtttttatctgtctgtaactgccccttttccctactcatctcattgac |
100 |
Q |
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| T |
41812280 |
tctgcagagttgatccctcttcctttttaccctgcaactcctccaataaatggtttttatctgtctgtaactgccccttttccctactcatctcattgac |
41812181 |
T |
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| Q |
101 |
agattcttttgcaacctgaagctcgtatgagatgtttgagatgcggttctcataattattgcagtcatccgaaaatttagagcttatagtatctatccca |
200 |
Q |
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| T |
41812180 |
agattcttttgcaacctgaagctcgtatgagatgtttgagatgcggttctcataattattgcagtcatccgaaaatttagagcttatagtatctatccca |
41812081 |
T |
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| Q |
201 |
gatatcatactgttgacacactttttaa |
228 |
Q |
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| T |
41812080 |
gatatcatactgttgacacactttttaa |
41812053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 41799060 - 41798844
Alignment:
| Q |
5 |
cagagttgatccctcttcctttttaccctgtaactcctccaataaatggtttttatctgtctgtaactgccccttttccctactcatctcattgacagat |
104 |
Q |
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| T |
41799060 |
cagagttaattccccttcctttttaccctgcagttcctctaacaaacaatctttatctctctgtaactgccccttcaccctattcatcttgctgacagat |
41798961 |
T |
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| Q |
105 |
tcttttgcaacctgaagctcgtatgagatgtttgagatgcggttctcataattattgcagtcatccgaaaatttagagcttatagtatctatcccagata |
204 |
Q |
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| T |
41798960 |
tcttttgcaacctgaagctcatgggagatgtttgatatgtagttctcatgatttttgctttcgtcggaaaatttccggctcaaagtatctatcccagata |
41798861 |
T |
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| Q |
205 |
tcatactgttgacacac |
221 |
Q |
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| T |
41798860 |
tcacactgttgacacac |
41798844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 41805445 - 41805315
Alignment:
| Q |
5 |
cagagttgatccctcttcctttttaccctgtaactcctccaataaatggttttt-atctgtctgtaactgccccttttccctactcatctcattgacaga |
103 |
Q |
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||||||| || |||||||| |||||||||| | ||||||||| ||||||||||| ||||||||||||||||| ||||||| | |||||| ||||| | | |
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| T |
41805445 |
cagagttaattcctcttcccttttaccctgcagctcctccaacaaatggttttttatctgtctgtaactgcctcttttccttgttcatcttattgatata |
41805346 |
T |
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| Q |
104 |
ttcttttgcaacctgaagctcgtatgagatg |
134 |
Q |
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| T |
41805345 |
ttcttttgtaacctgaagctcatgtgagatg |
41805315 |
T |
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