View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8922_low_6 (Length: 513)
Name: NF8922_low_6
Description: NF8922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8922_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 17 - 497
Target Start/End: Original strand, 39307420 - 39307894
Alignment:
| Q |
17 |
aaaaaaccaagtaaggtaccacaaatatatgacaatggcctacatcaccaaggttggtggtagcagcatgaccaatggtgtaaccacagtagattgtcaa |
116 |
Q |
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| T |
39307420 |
aaaaaaccaagtaaggtaccacaaatatatgacaatggcctacatcaccaaggttggtagtagcagcatgaccaatggtgtaaccacagtagattgtcaa |
39307519 |
T |
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| Q |
117 |
aaacaagttcgatcatggaggcttctacgttcactcattgaactactaatccctacttgcaactgcaccttagttgaacaagaacaagaccaagatatta |
216 |
Q |
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| T |
39307520 |
aaacaagttcgatcatggaggcttctacgttcactcattgaactactaatccctacttgcaactgcaccttagt------agaacaagaccaagatatta |
39307613 |
T |
|
| Q |
217 |
gtaattcaaaacactctcaccaaaactataacaaatatccatcatcacattcttcactcatgacatctacaacaattactggcacgatattcggataccg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39307614 |
gtaattcaaaacactctcaccaaaactataacaaatatccatcatcacattcttcactcatgacatctacaacaattactggcacgatattcggataccg |
39307713 |
T |
|
| Q |
317 |
taaaggaaaagtaagtttttgtattcaatccaactcaaattccacaaaccctattcttcttttagaacttgcaattccaacaagtgttttagcaaaggaa |
416 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39307714 |
taaaggaaaagtaagtttttgtattcaatccagctcaaattccacaaaccctattcttcttttagaacttgcaattccaacaagtgttttagcaaaggaa |
39307813 |
T |
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| Q |
417 |
atgagaggaggaacgttgagaattgtgctagaaagtgctacctcaggatcttgtaacaataacagtaacttgttttcaact |
497 |
Q |
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| T |
39307814 |
atgagaggaggaacgttgagaattgtgctagaaagtgctacctcaggatcttgtaacaataacagtaacttgttttcaact |
39307894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 439
Target Start/End: Original strand, 37494697 - 37494870
Alignment:
| Q |
266 |
ttcttcactcatgacatctacaacaattactggcacgatattcggataccgtaaaggaaaagtaagtttttgtattcaatccaactcaaattccacaaac |
365 |
Q |
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||||||||||| |||| || || ||||| ||||| ||||| |||||||| ||||||||| |||||||||| |||||||| || |||| ||||| | | |
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| T |
37494697 |
ttcttcactcacaccatccaccaccattacaggcacaatatttggataccgcaaaggaaaaataagtttttgcattcaatcaaatgcaaactccactacc |
37494796 |
T |
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| Q |
366 |
cctattcttcttttagaacttgcaattccaacaagtgttttagcaaaggaaatgagaggaggaacgttgagaat |
439 |
Q |
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|| ||||| ||| ||||| | ||| | ||| ||| ||||||| | ||||||| |||||||||| |||||||| |
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| T |
37494797 |
ccaattctccttctagaattagcagtaccagcaaacattttagcgagggaaatgcgaggaggaacattgagaat |
37494870 |
T |
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