View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8922_low_9 (Length: 486)
Name: NF8922_low_9
Description: NF8922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8922_low_9 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 486
Target Start/End: Original strand, 51388863 - 51389330
Alignment:
| Q |
19 |
aacattgttattgcaagaatcatcctcttcagcaatctgaaaacaatacattttgaactttttaatcttaaagtgcatgatctatgagcagtattaaaaa |
118 |
Q |
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|||||||||||||||||||||||| |||||| |||| |||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
51388863 |
aacattgttattgcaagaatcatcatcttcaacaatttgaaaagaatacattttgaacttttaaatcttaaagtgcatgatctaggagcagtattaaaaa |
51388962 |
T |
|
| Q |
119 |
gaaattagtaacttttcatggtacaatttttggcaaattcaaataagagaagcaaactcacaacaatatatggtatgagtccttggaacattttaacgat |
218 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51388963 |
gaaattagtaacttttcatggtacaatttttggcatattcaaataagagaagcaaactcacaacaatatatggtatgagtccttggaacattttaacgat |
51389062 |
T |
|
| Q |
219 |
gcacaaaagaaagggtaactaactataaatgtatgaagatatatcatttgttaaggattcaagtttttaaagatacatgggagtttaaaataccaaaaac |
318 |
Q |
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|||||||||||||||||||||| ||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51389063 |
gcacaaaagaaagggtaactaattataaatgtctaaagatatattatttgttaaggattcaagtttttaaagatacatgggagtttaaaataccaaaaac |
51389162 |
T |
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| Q |
319 |
ttgtatgtaaagaacctaaactgtccaaaaccaatataactaactatgcagaaaatataaaaagacaacaacccctgtgttagactatctttgggatgat |
418 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||| |
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| T |
51389163 |
ttgtatgcaaagaacctaaactgtccaaaaccaatataactaactatgcagaaaatataaaaagacaacaacacttgtgttagactaactttgggatgat |
51389262 |
T |
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| Q |
419 |
tctatactgacctacataatttcaattttaaatgcctaagatttataacaatataatcaagtaacaat |
486 |
Q |
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| T |
51389263 |
tctatactgacctacataatttcaattttaaatgcctaagatttataacaatataatcaagtaacaat |
51389330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 372 - 486
Target Start/End: Complemental strand, 770838 - 770723
Alignment:
| Q |
372 |
aatataaaaagacaacaacccctgtgttagactatctttggg-atgattctatactgacctacataatttcaattttaaatgcctaagatttataacaat |
470 |
Q |
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||||||||||||||||||| | |||||||||||| ||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
770838 |
aatataaaaagacaacaacacttgtgttagactaactttggggatgattctatatagacctacataatttcaattttatatgcctaagatttatagcaat |
770739 |
T |
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| Q |
471 |
ataatcaagtaacaat |
486 |
Q |
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|||||||||||||||| |
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| T |
770738 |
ataatcaagtaacaat |
770723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 26958722 - 26958638
Alignment:
| Q |
18 |
gaacattgttattgcaagaatcatcctcttcagcaatctgaaaacaatacattttgaactttttaatcttaaagtgcatgatcta |
102 |
Q |
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| T |
26958722 |
gaacattgttattgcaagaatcatcctcttcagcaatctgaaaacaatacattttgaactttttattcttaaagtgaatgatcta |
26958638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 40949993 - 40949909
Alignment:
| Q |
18 |
gaacattgttattgcaagaatcatcctcttcagcaatctgaaaacaatacattttgaactttttaatcttaaagtgcatgatcta |
102 |
Q |
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| T |
40949993 |
gaacattgttattgcaagaatcatcctcttcagcaatctgaaaacaatacattttgaactttttattcttaaagtgaatgatcta |
40949909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 394 - 486
Target Start/End: Complemental strand, 4351910 - 4351817
Alignment:
| Q |
394 |
tgtgttagactatctttggg-atgattctatactgacctacataatttcaattttaaatgcctaagatttataacaatataatcaagtaacaat |
486 |
Q |
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|||||||||||| ||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||| |||||||||| |
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| T |
4351910 |
tgtgttagactaactttggggatgattctataaagacctgcataatttcaattttaaatgtctaagatttataacaatgtaataaagtaacaat |
4351817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 394 - 486
Target Start/End: Original strand, 8028078 - 8028170
Alignment:
| Q |
394 |
tgtgttagactatctttg-ggatgattctatactgacctacataatttcaattttaaatgcctaagatttataacaatataatcaagtaacaat |
486 |
Q |
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|||||||||||| ||||| ||||||||||||| | |||||||||||||||||||||||| || |||||||||| ||||||||||||||||||| |
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| T |
8028078 |
tgtgttagactaactttgcggatgattctata-taacctacataatttcaattttaaatacccaagatttatagaaatataatcaagtaacaat |
8028170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 486
Target Start/End: Complemental strand, 32663364 - 32663312
Alignment:
| Q |
434 |
ataatttcaattttaaatgcctaagatttataacaatataatcaagtaacaat |
486 |
Q |
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| T |
32663364 |
ataatttcaattttaaacgcctaagatttataaaaaaatattcaagtaacaat |
32663312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 394 - 486
Target Start/End: Original strand, 12572187 - 12572283
Alignment:
| Q |
394 |
tgtgttagactatctttggg-atgattctatactgac---ctacataatttcaattttaaatgcctaagatttataacaatataatcaagtaacaat |
486 |
Q |
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|||||||||||| ||||||| ||||||||||| || || |||||||| ||||||||||| ||||||||||||||||| |||| |||||||||| |
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| T |
12572187 |
tgtgttagactaactttggggatgattctataaagattctctgcataattttaattttaaatgtctaagatttataacaatgtaataaagtaacaat |
12572283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 394 - 486
Target Start/End: Original strand, 13548651 - 13548747
Alignment:
| Q |
394 |
tgtgttagactatctttggg-atgattctatactgac---ctacataatttcaattttaaatgcctaagatttataacaatataatcaagtaacaat |
486 |
Q |
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|||||||||||| ||||||| ||||||||||| || || |||||||| ||||||||||| ||||||||||||||||| |||| |||||||||| |
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| T |
13548651 |
tgtgttagactaactttggggatgattctataaagattctctgcataattttaattttaaatgtctaagatttataacaatgtaataaagtaacaat |
13548747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 336
Target Start/End: Original strand, 12571942 - 12572052
Alignment:
| Q |
223 |
aaaagaaagggtaactaactataaatgtatgaagatatatcatttgttaaggattcaagtttttaaagatacatgggagtttaaaataccaaaaacttgt |
322 |
Q |
| |
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|||||||||| |||||||| || || ||| |||||||||||||||||||| ||||| |||||||||| |||| || ||||||||||||||| ||||| |
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| T |
12571942 |
aaaagaaagg-taactaaccatgaacatataaagatatatcatttgttaagagttcaa-tttttaaagacacat-tgaatttaaaataccaaaagcttgt |
12572038 |
T |
|
| Q |
323 |
atgtaaagaaccta |
336 |
Q |
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| |||||||||| |
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| T |
12572039 |
ctacaaagaaccta |
12572052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 336
Target Start/End: Original strand, 13548406 - 13548516
Alignment:
| Q |
223 |
aaaagaaagggtaactaactataaatgtatgaagatatatcatttgttaaggattcaagtttttaaagatacatgggagtttaaaataccaaaaacttgt |
322 |
Q |
| |
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|||||||||| |||||||| || || ||| |||||||||||||||||||| ||||| |||||||||| |||| || ||||||||||||||| ||||| |
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| T |
13548406 |
aaaagaaagg-taactaaccatgaacatataaagatatatcatttgttaagagttcaa-tttttaaagacacat-tgaatttaaaataccaaaagcttgt |
13548502 |
T |
|
| Q |
323 |
atgtaaagaaccta |
336 |
Q |
| |
|
| |||||||||| |
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|
| T |
13548503 |
ctacaaagaaccta |
13548516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 336
Target Start/End: Complemental strand, 4293552 - 4293442
Alignment:
| Q |
223 |
aaaagaaagggtaactaactataaatgtatgaagatatatcatttgttaaggattcaagtttttaaagatacatgggagtttaaaataccaaaaacttgt |
322 |
Q |
| |
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|||||||||| |||||||| || || ||| |||||||||||||||||||| ||||| |||||||||| |||| | | ||||||||||||||| ||||| |
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| T |
4293552 |
aaaagaaagg-taactaaccatgaacatataaagatatatcatttgttaagagttcaa-tttttaaagacacattgaa-tttaaaataccaaaagcttgt |
4293456 |
T |
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| Q |
323 |
atgtaaagaaccta |
336 |
Q |
| |
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|| |||||||||| |
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|
| T |
4293455 |
ctgcaaagaaccta |
4293442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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