View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8923_high_10 (Length: 315)
Name: NF8923_high_10
Description: NF8923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8923_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 7027009 - 7027294
Alignment:
| Q |
18 |
ttatgtaggaaattcatactatggcatatgccaaacctacttgatagttggaattggttgttggacacctttcctaagtccttgtaggcttccatcagca |
117 |
Q |
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| T |
7027009 |
ttatgtaggaaattcatactatggcatatgccaaacctacttgatagttggaattggttgttggacacctttcctaagtccttgtaggcttccatcagcg |
7027108 |
T |
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| Q |
118 |
ttttttaaggccataaggtataaaactacatctctaatgaccatggcagtaccataggtcaaagttccacgtttatatgacggagttttggccatcggca |
217 |
Q |
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| T |
7027109 |
ttttttaaggccataaggtataaaactacatctctaatgaccatggcagtaccataggtcaaagttccacgtttatatgacggagttttggccatcggca |
7027208 |
T |
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| Q |
218 |
attgacaactttacaaatgatcttatcttcacactgtcagttcagttaatttgagtcaaatatctcagt---tacgagatcctcat |
300 |
Q |
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| T |
7027209 |
attgacaactttacatatgatcttatcttcacactgtcagttcagttaatttgagtcaaatatctcagttgctacgagatcctcat |
7027294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 2976988 - 2977047
Alignment:
| Q |
37 |
tatggcatatgccaaacctacttgatagttggaattggttgttggacacctttcctaagtc |
97 |
Q |
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| T |
2976988 |
tatggcctgtgccaaacctacttgatagttgg-attggttgttcgacacctttcctaagtc |
2977047 |
T |
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