View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8923_low_11 (Length: 435)

Name: NF8923_low_11
Description: NF8923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8923_low_11
NF8923_low_11
[»] chr2 (4 HSPs)
chr2 (151-419)||(5051479-5051742)
chr2 (11-85)||(5051339-5051413)
chr2 (17-85)||(36592861-36592929)
chr2 (151-251)||(36592995-36593095)
[»] chr5 (6 HSPs)
chr5 (151-420)||(9436510-9436770)
chr5 (153-413)||(33758261-33758522)
chr5 (162-254)||(27632083-27632175)
chr5 (151-251)||(36607762-36607862)
chr5 (11-85)||(33758121-33758193)
chr5 (11-85)||(9436370-9436444)
[»] chr4 (15 HSPs)
chr4 (155-413)||(50589677-50589935)
chr4 (151-332)||(14792327-14792508)
chr4 (151-254)||(12888336-12888439)
chr4 (165-413)||(51407028-51407283)
chr4 (11-85)||(12888196-12888270)
chr4 (11-85)||(14792187-14792261)
chr4 (19-81)||(3926263-3926325)
chr4 (17-85)||(51407363-51407429)
chr4 (151-239)||(18357186-18357273)
chr4 (151-239)||(18431534-18431621)
chr4 (11-85)||(18357046-18357120)
chr4 (11-85)||(18431687-18431761)
chr4 (11-76)||(23533308-23533373)
chr4 (19-77)||(3915276-3915334)
chr4 (11-85)||(50589532-50589606)
[»] chr7 (13 HSPs)
chr7 (151-332)||(15121291-15121472)
chr7 (153-392)||(47589127-47589366)
chr7 (151-254)||(5892811-5892912)
chr7 (151-254)||(36934323-36934426)
chr7 (11-85)||(5892978-5893052)
chr7 (156-254)||(26199880-26199981)
chr7 (18-85)||(36934201-36934268)
chr7 (346-419)||(15118553-15118626)
chr7 (17-73)||(40074342-40074398)
chr7 (11-85)||(26199735-26199809)
chr7 (11-85)||(47588985-47589059)
chr7 (310-357)||(8744673-8744720)
chr7 (29-85)||(15121538-15121593)
[»] chr3 (8 HSPs)
chr3 (151-360)||(51056587-51056796)
chr3 (151-252)||(25498932-25499033)
chr3 (227-338)||(38258950-38259061)
chr3 (11-85)||(51056861-51056935)
chr3 (17-81)||(38258783-38258847)
chr3 (11-85)||(25498791-25498865)
chr3 (173-206)||(49358685-49358718)
chr3 (17-85)||(49358536-49358604)
[»] scaffold0005 (2 HSPs)
scaffold0005 (151-332)||(47223-47404)
scaffold0005 (11-85)||(47470-47544)
[»] chr6 (5 HSPs)
chr6 (151-254)||(22696637-22696740)
chr6 (162-254)||(34502876-34502968)
chr6 (17-85)||(22696503-22696571)
chr6 (11-85)||(34503045-34503119)
chr6 (17-57)||(24045609-24045649)
[»] chr1 (6 HSPs)
chr1 (177-329)||(36057639-36057791)
chr1 (177-329)||(36058767-36058919)
chr1 (151-254)||(32946800-32946903)
chr1 (203-360)||(27109901-27110058)
chr1 (11-85)||(27109801-27109875)
chr1 (27-85)||(32946969-32947027)
[»] chr8 (4 HSPs)
chr8 (151-254)||(20519108-20519211)
chr8 (151-251)||(38149387-38149487)
chr8 (19-85)||(20518976-20519042)
chr8 (151-201)||(32919437-32919487)


Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 151 - 419
Target Start/End: Original strand, 5051479 - 5051742
Alignment:
Q  151 cctccacatatatctggattggaaggaaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaag 250  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||    
T  5051479 cctccacatagatctggattggaaggaaacaaccaccacacaaaaacaccagacaatttgtatttttctaagagccgcaaactcagcacacgcaaggaag 5051578  T
Q  251 aaaacaacatcgtcgcaactattataccaaaaccaccaccaacatctcctattaactccaaaaccgagacttacctcaccactgtcaccatctcacacca 350  Q
    ||||||||     |||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  5051579 aaaacaac-----cgcaactattgtactaaaaccaccaccaacacctcctattacctccaaaaccgagacttacctcaccactgtcaccacctcacacca 5051673  T
Q  351 ccatcacttcctgcacatggatttgggacaaaacgaaacaaacacaaaagagccaccacgaaaatcaac 419  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  5051674 ccatcacttcctgcacagggatctgggacaaaacgaaacaaacacaaaagagccactacgaaaatcaac 5051742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 5051339 - 5051413
Alignment:
Q  11 acatcaacaaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttgaagac 85  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  5051339 acatcaacaaaccaccatataacagagtagtcaaaccggatgagaaggttatgatcgaacccaaccgttgaagac 5051413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 36592861 - 36592929
Alignment:
Q  17 acaaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttgaagac 85  Q
    |||||||||||||||||||||||| ||||| || ||||||||||||||| ||||||||| |||||||||    
T  36592861 acaaaccaccagataacagagtagccaaaccgggtgagaaggttatgatcgaacccaacagttgaagac 36592929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 251
Target Start/End: Original strand, 36592995 - 36593095
Alignment:
Q  151 cctccacatatatctggattggaaggaaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaag 250  Q
    |||||||||| ||||||||  ||||||||||| ||||||||||||||||||||||   ||| |||||| || |  |||||||||| ||| | ||||||||    
T  36592995 cctccacatagatctggatcagaaggaaacaatcaccacacaaaaacaccagacagcatgtgtttttccaacaaccgcaaactcaacacccacaaggaag 36593094  T
Q  251 a 251  Q
    |    
T  36593095 a 36593095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 151 - 420
Target Start/End: Original strand, 9436510 - 9436770
Alignment:
Q  151 cctccacatatatctggattggaaggaaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaag 250  Q
    |||||||||| |||||||| |||||||||||  |||||||||||||||| ||| ||  ||| |||||||||||| |||||||||||||| ||||||||||    
T  9436510 cctccacatagatctggatcggaaggaaacatacaccacacaaaaacactagaaaacatgtgtttttctaagagccgcaaactcagcacccgcaaggaag 9436609  T
Q  251 aaaacaacatcgtcgcaactattataccaaaaccaccaccaacatctcctattaactccaaaaccgagacttacctcaccactgtcaccatctcacacca 350  Q
    ||| ||||| |  | |||||||| ||||||||||||| |||||| ||||| ||| |||||||||  ||||||||||||||||         |||||| ||    
T  9436610 aaagcaacaccaccacaactattgtaccaaaaccaccgccaacacctcctcttacctccaaaacaaagacttacctcaccac---------ctcacatca 9436700  T
Q  351 ccatcacttcctgcacatggatttgggacaaaacgaaacaaacacaaaagagccaccacgaaaatcaaca 420  Q
    ||||||||||||||||| |||| ||||||| | | |||||||||| ||| |||| |||||||||||||||    
T  9436701 ccatcacttcctgcacacggatctgggacagatcaaaacaaacacgaaacagccgccacgaaaatcaaca 9436770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 153 - 413
Target Start/End: Original strand, 33758261 - 33758522
Alignment:
Q  153 tccacatatatctggattggaaggaaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaagaa 252  Q
    |||||| | |||||||| ||||||||||| ||||||||| |||||||||||||| |||| |||||||||  | ||||||||||| || | |||| |||||    
T  33758261 tccacaaagatctggatcggaaggaaacatccaccacactaaaacaccagacaacctgtgtttttctaacggccgcaaactcagtacccacaagaaagaa 33758360  T
Q  253 aacaacatcgtcgcaactatta-taccaaaaccaccaccaacatctcctattaactccaaaaccgagacttacctcaccactgtcaccatctcacaccac 351  Q
    |||| || |   ||| |||  | ||||||||| |||| || || ||||| ||| | |||||  ||||||||| |||||| |  ||||||  |||||||||    
T  33758361 aacagcaccactgcagctaacagtaccaaaactaccatcatcacctcctcttaccaccaaagtcgagacttatctcaccgccatcaccacgtcacaccac 33758460  T
Q  352 catcacttcctgcacatggatttgggacaaaacgaaacaaacacaaaagagccaccacgaaa 413  Q
    ||||||||||| ||||   || ||| ||| | |||||||||||| ||| |||| ||||||||    
T  33758461 catcacttcctccacacaaatctggaacagatcgaaacaaacacgaaacagccgccacgaaa 33758522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 162 - 254
Target Start/End: Complemental strand, 27632175 - 27632083
Alignment:
Q  162 atctggattggaaggaaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaagaaaa 254  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||  |||  |||||||| || |||||||||||||| |||||| |||||||    
T  27632175 atctggatcggaaggaaacaaccaccacacaaaaacaccaaacaacttgtgcttttctaacagccgcaaactcagcacccgcaagaaagaaaa 27632083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 151 - 251
Target Start/End: Complemental strand, 36607862 - 36607762
Alignment:
Q  151 cctccacatatatctggattggaaggaaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaag 250  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||| ||||||| |||| ||||||||| || | |||||||   || ||||||||||    
T  36607862 cctccacataaatctggattggaaggaaacaaccaccaagcaaaaacatcagacaacctgtgtttttctaacagccacaaactccatacccgcaaggaag 36607763  T
Q  251 a 251  Q
    |    
T  36607762 a 36607762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 33758121 - 33758193
Alignment:
Q  11 acatcaacaaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttgaagac 85  Q
    ||||| |||||||| ||||||||||  ||||| ||||||||||||||||| |||| |||||||||||||||||||    
T  33758121 acatcgacaaaccatcagataacag--tagtcgaactggatgagaaggttctgatcgaacccaaccgttgaagac 33758193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 9436370 - 9436444
Alignment:
Q  11 acatcaacaaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttgaagac 85  Q
    ||||| ||||||||| ||||||||||||| || |||  |||||||||||| ||||||||| || |||||||||||    
T  9436370 acatcgacaaaccactagataacagagtaatcgaaccagatgagaaggttttgattgaactcagccgttgaagac 9436444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 155 - 413
Target Start/End: Original strand, 50589677 - 50589935
Alignment:
Q  155 cacatatatctggattggaaggaaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaagaaaa 254  Q
    |||||||||||||||   |||||||||||||||||||| |||||||| ||||  ||| | ||||||| |||||||||||||||||  ||| |||||||||    
T  50589677 cacatatatctggatcaaaaggaaacaaccaccacacataaacaccaaacaacatgtgtatttctaacagtcgcaaactcagcacctgcatggaagaaaa 50589776  T
Q  255 caacatcgtcgcaactattataccaaaaccaccaccaacatctcctattaactccaaaaccgagacttacctcaccactgtcaccatctcacaccaccat 354  Q
    |||||||||||||||||   |||| |||||||||||| || ||||| ||| |  |||||||||||||||||||||||| ||||||   ||||||||||||    
T  50589777 caacatcgtcgcaactacagtacctaaaccaccaccatcacctcctcttaccatcaaaaccgagacttacctcaccaccgtcaccgcatcacaccaccat 50589876  T
Q  355 cacttcctgcacatggatttgggacaaaacgaaacaaacacaaaagagccaccacgaaa 413  Q
    | |||||| ||||  ||| ||||||| | |||||| | ||| ||| |||| ||||||||    
T  50589877 cgcttccttcacacagatatgggacatatcgaaacgatcacgaaacagccgccacgaaa 50589935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 151 - 332
Target Start/End: Original strand, 14792327 - 14792508
Alignment:
Q  151 cctccacatatatctggattggaaggaaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaag 250  Q
    |||||||||| ||||||||  |||||||||||||||||||| ||  |||||| ||| |||| ||||||||| ||||||||||||||||| ||||||||||    
T  14792327 cctccacatagatctggatcagaaggaaacaaccaccacacgaattcaccaggcaacctgtgtttttctaacagtcgcaaactcagcacccgcaaggaag 14792426  T
Q  251 aaaacaacatcgtcgcaactattataccaaaaccaccaccaacatctcctattaactccaaaaccgagacttacctcaccac 332  Q
    |||||| ||||| |||  |||   ||||||||||||||||| ||  |||| ||| | |||| ||||||||||||||| ||||    
T  14792427 aaaacatcatcgccgcggctacagtaccaaaaccaccaccatcacatcctcttaccaccaagaccgagacttacctcgccac 14792508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 12888336 - 12888439
Alignment:
Q  151 cctccacatatatctggattggaaggaaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaag 250  Q
    |||||||||| ||||||||  |||||||||||||||| |||||||||||||||||| |||| |||| |||| || |||||||||||||| ||||||||||    
T  12888336 cctccacatagatctggatcagaaggaaacaaccaccgcacaaaaacaccagacaacctgtgttttactaacagccgcaaactcagcacccgcaaggaag 12888435  T
Q  251 aaaa 254  Q
    ||||    
T  12888436 aaaa 12888439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 165 - 413
Target Start/End: Complemental strand, 51407283 - 51407028
Alignment:
Q  165 tggattggaaggaaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaagaaaacaacatcgtc 264  Q
    ||||| ||||||||||| ||||||||| |||||||||||||| |||| ||||||||| |  |||||||||||||| | |||| ||||||||| |  |       
T  51407283 tggatcggaaggaaacatccaccacactaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcacccacaagaaagaaaacagccccact 51407184  T
Q  265 gcaactatta-taccaaaaccaccaccaacatctcctattaactccaaaaccgagactta------cctcaccactgtcaccatctcacaccaccatcac 357  Q
    |||||||  | ||||||||| |||| || || ||||| ||| | |||||| |||||||||      | ||||||| |||||||  |||||||||||||||    
T  51407183 gcaactagcagtaccaaaactaccatcatcacctcctcttaccaccaaaatcgagacttacaccgccatcaccaccgtcaccacgtcacaccaccatcac 51407084  T
Q  358 ttcctgcacatggatttgggacaaaacgaaacaaacacaaaagagccaccacgaaa 413  Q
    ||||| ||||  ||| ||| ||||| |||||||||||| ||  |||| ||||||||    
T  51407083 ttcctccacacagatctggaacaaatcgaaacaaacacgaagcagccgccacgaaa 51407028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 12888196 - 12888270
Alignment:
Q  11 acatcaacaaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttgaagac 85  Q
    ||||| |||||||||||||||||||||||||| ||  ||||||||||| | |||| |||||||||||||||||||    
T  12888196 acatcgacaaaccaccagataacagagtagtcgaatcggatgagaaggatctgatcgaacccaaccgttgaagac 12888270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 14792187 - 14792261
Alignment:
Q  11 acatcaacaaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttgaagac 85  Q
    ||||| |||| ||||||||||||||||||||| ||| ||||||||  |||||||| |||||||||||||||||||    
T  14792187 acatcgacaacccaccagataacagagtagtcgaaccggatgagatagttatgatcgaacccaaccgttgaagac 14792261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 3926263 - 3926325
Alignment:
Q  19 aaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttga 81  Q
    |||||||||||||||||||||||| ||| ||||||||||||| |||| |||||||||| ||||    
T  3926263 aaaccaccagataacagagtagtcgaaccggatgagaaggttctgatcgaacccaaccattga 3926325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 51407429 - 51407363
Alignment:
Q  17 acaaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttgaagac 85  Q
    |||||||| ||||||||||  ||||| ||||||||||||||||| |||| |||||||||||||||||||    
T  51407429 acaaaccatcagataacag--tagtccaactggatgagaaggttctgatcgaacccaaccgttgaagac 51407363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 18357186 - 18357273
Alignment:
Q  151 cctccacatatatctggattggaaggaaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcac 239  Q
    ||||| |||| || ||||| ||||||||| ||||| |||||||||||||||||||| ||||||||| |||| ||  |||||||||||||    
T  18357186 cctccgcatagatttggatcggaaggaaa-aaccatcacacaaaaacaccagacaacctgtattttcctaacagctgcaaactcagcac 18357273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 18431621 - 18431534
Alignment:
Q  151 cctccacatatatctggattggaaggaaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcac 239  Q
    ||||| |||| || ||||| ||||||||| ||||| |||||||||||||||||||| ||||||||| |||| ||  |||||||||||||    
T  18431621 cctccgcatagatttggatcggaaggaaa-aaccatcacacaaaaacaccagacaacctgtattttcctaacagctgcaaactcagcac 18431534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 18357046 - 18357120
Alignment:
Q  11 acatcaacaaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttgaagac 85  Q
    ||||| ||||| ||| | |||||||||||||| ||| |||||||||| || |||| |||||||||||||||||||    
T  18357046 acatcgacaaaacactatataacagagtagtcgaaccggatgagaagattctgatcgaacccaaccgttgaagac 18357120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 18431761 - 18431687
Alignment:
Q  11 acatcaacaaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttgaagac 85  Q
    ||||| ||||| ||| | |||||||||||||| ||| |||||||||| || |||| |||||||||||||||||||    
T  18431761 acatcgacaaaacactatataacagagtagtcgaaccggatgagaagattctgatcgaacccaaccgttgaagac 18431687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 23533308 - 23533373
Alignment:
Q  11 acatcaacaaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaacc 76  Q
    ||||| ||||||||||||||||||||||| |  ||| || ||||||||||||||| ||| ||||||    
T  23533308 acatcgacaaaccaccagataacagagtacttgaaccgggtgagaaggttatgatcgaatccaacc 23533373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 3915276 - 3915334
Alignment:
Q  19 aaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccg 77  Q
    |||||||||||||||||| ||||| |||  |||||||||||| | || |||||||||||    
T  3915276 aaaccaccagataacagaatagtcgaaccagatgagaaggttctaatcgaacccaaccg 3915334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 50589532 - 50589606
Alignment:
Q  11 acatcaacaaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttgaagac 85  Q
    ||||| |||||| |||||||||||||| |||| ||| || || ||||||| |||| |||||||||| | ||||||    
T  50589532 acatcgacaaactaccagataacagagcagtcgaaccgggtgggaaggttttgatcgaacccaaccatcgaagac 50589606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 151 - 332
Target Start/End: Complemental strand, 15121472 - 15121291
Alignment:
Q  151 cctccacatatatctggattggaaggaaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaag 250  Q
    |||||| ||| |||||||| ||||||||||| ||||||||||||| |||||||||| || | |||||||||||| |||||||||||||| ||||||||||    
T  15121472 cctccatatagatctggatcggaaggaaacatccaccacacaaaagcaccagacaacctatgtttttctaagagccgcaaactcagcacccgcaaggaag 15121373  T
Q  251 aaaacaacatcgtcgcaactattataccaaaaccaccaccaacatctcctattaactccaaaaccgagacttacctcaccac 332  Q
    ||| ||||| || ||||||||   || ||||||||||||||||| ||||| ||| |||||||| | ||||||||||||||||    
T  15121372 aaaccaacaccgccgcaactaccgtatcaaaaccaccaccaacacctcctcttacctccaaaagctagacttacctcaccac 15121291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 153 - 392
Target Start/End: Original strand, 47589127 - 47589366
Alignment:
Q  153 tccacatatatctggattggaaggaaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaagaa 252  Q
    |||||||| | ||||||  |||||||||  ||||||||||||||||||| |||| |||| ||||||||| |||||||||||||  || | | ||||||||    
T  47589127 tccacatagacctggatcagaaggaaacgtccaccacacaaaaacaccaaacaacctgtgtttttctaaaagtcgcaaactcaatacccacgaggaagaa 47589226  T
Q  253 aacaacatcgtcgcaactattataccaaaaccaccaccaacatctcctattaactccaaaaccgagacttacctcaccactgtcaccatctcacaccacc 352  Q
    |||| || || ||||||||   ||||||||||||||||| || ||| | ||| | ||||||||||||||||||||||||| || |||| ||| |||||||    
T  47589227 aacagcaccgccgcaactacagtaccaaaaccaccaccatcacctcttcttaccaccaaaaccgagacttacctcaccaccgtgaccacctcgcaccacc 47589326  T
Q  353 atcacttcctgcacatggatttgggacaaaacgaaacaaa 392  Q
    |||||||||| ||||  ||| ||||||| | |||||||||    
T  47589327 atcacttcctccacacagatctgggacatatcgaaacaaa 47589366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 5892912 - 5892811
Alignment:
Q  151 cctccacatatatctggattggaaggaaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaag 250  Q
    |||||||||| ||||| || |||||||||  ||||||||||||||||||||||||| |||| ||||||||| || |||||||||||||  ||||||||||    
T  5892912 cctccacatagatctgaatcggaaggaaa--accaccacacaaaaacaccagacaacctgtgtttttctaatagccgcaaactcagcatccgcaaggaag 5892815  T
Q  251 aaaa 254  Q
    ||||    
T  5892814 aaaa 5892811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 36934323 - 36934426
Alignment:
Q  151 cctccacatatatctggattggaaggaaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaag 250  Q
    |||||||||| ||||  || ||||||||||| |||||||||||||||||||||||| |||| ||||||||| || |||||||||||||| ||| |||| |    
T  36934323 cctccacatagatcttaatcggaaggaaacatccaccacacaaaaacaccagacaaactgtgtttttctaacagccgcaaactcagcacccgctaggacg 36934422  T
Q  251 aaaa 254  Q
    ||||    
T  36934423 aaaa 36934426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 5893052 - 5892978
Alignment:
Q  11 acatcaacaaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttgaagac 85  Q
    ||||| ||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||||||||||||||||    
T  5893052 acatcgacaaaccaccagataacagagtaatcgaaccggatgagaaggttctgattgaacccaaccgttgaagac 5892978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 26199880 - 26199981
Alignment:
Q  156 acatatatctggattggaaggaaacaaccaccacacaaaaacaccagaca---atctgtatttttctaagagtcgcaaactcagcactcgcaaggaagaa 252  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||   | |||| ||||||||| || ||||||||||||||  | |||||||||    
T  26199880 acatagatctggatcggaaggaaacaaccaccacacaaaaacaccagacaaccaactgtgtttttctaacagccgcaaactcagcaccaggaaggaagaa 26199979  T
Q  253 aa 254  Q
    ||    
T  26199980 aa 26199981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 36934201 - 36934268
Alignment:
Q  18 caaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttgaagac 85  Q
    ||||||||||||||| ||||||||| |||  |||||||||||| |||| |||||||||||||||||||    
T  36934201 caaaccaccagataatagagtagtcgaaccagatgagaaggttctgatcgaacccaaccgttgaagac 36934268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 419
Target Start/End: Complemental strand, 15118626 - 15118553
Alignment:
Q  346 caccaccatcacttcctgcacatggatttgggacaaaacgaaacaaacacaaaagagccaccacgaaaatcaac 419  Q
    ||||||||||||||||||||| ||||| ||||||| | |||||||||||| ||| |||||||  ||||||||||    
T  15118626 caccaccatcacttcctgcacttggatatgggacagatcgaaacaaacacgaaacagccaccttgaaaatcaac 15118553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 40074398 - 40074342
Alignment:
Q  17 acaaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaaccca 73  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||| |||| |||||||    
T  40074398 acaaaccaccagataacatagtagtcgaaccggatgagaaggttctgatcgaaccca 40074342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 26199735 - 26199809
Alignment:
Q  11 acatcaacaaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttgaagac 85  Q
    ||||| ||||||||||| |||| ||||||||| |||  |||||||||||  |||| |||||||||| ||||||||    
T  26199735 acatcgacaaaccaccaaataatagagtagtcgaacctgatgagaaggtactgatcgaacccaaccattgaagac 26199809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 47588985 - 47589059
Alignment:
Q  11 acatcaacaaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttgaagac 85  Q
    ||||| ||||| || ||||||||| ||||||||||| |||||||||| || |||| |||| |||||||| |||||    
T  47588985 acatcgacaaatcatcagataacacagtagtcaaaccggatgagaagattctgatcgaactcaaccgttaaagac 47589059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 357
Target Start/End: Complemental strand, 8744720 - 8744673
Alignment:
Q  310 aaaaccgagacttacctcaccactgtcaccatctcacaccaccatcac 357  Q
    ||||||| ||||||||||||||| ||||||  ||||||||||||||||    
T  8744720 aaaaccgtgacttacctcaccaccgtcacctcctcacaccaccatcac 8744673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 15121593 - 15121538
Alignment:
Q  29 ataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttgaagac 85  Q
    |||||||||||||| |||  |||||||||||| |||| ||| |||||||||||||||    
T  15121593 ataacagagtagtcgaaccagatgagaaggttctgatcgaa-ccaaccgttgaagac 15121538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 151 - 360
Target Start/End: Complemental strand, 51056796 - 51056587
Alignment:
Q  151 cctccacatatatctggattggaaggaaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaag 250  Q
    |||||||||| ||||||||  ||||||||||||||||| ||||||||||||||||| |||| || |||||| |  ||||||||||||||  | |||||||    
T  51056796 cctccacatagatctggatcagaaggaaacaaccaccatacaaaaacaccagacaacctgtgttgttctaacaaccgcaaactcagcacctgtaaggaag 51056697  T
Q  251 aaaacaacatcgtcgcaactattataccaaaaccaccaccaacatctcctattaactccaaaaccgagacttacctcaccactgtcaccatctcacacca 350  Q
    |||||||||  |||||| |||  |||||||||| ||||||| || ||||| ||| | ||||||| ||||||||||||||||| |||||||  | ||||||    
T  51056696 aaaacaacactgtcgcagctacaataccaaaacgaccaccatcacctcctcttaccaccaaaactgagacttacctcaccaccgtcaccacgtaacacca 51056597  T
Q  351 ccatcacttc 360  Q
    ||||||||||    
T  51056596 ccatcacttc 51056587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 151 - 252
Target Start/End: Original strand, 25498932 - 25499033
Alignment:
Q  151 cctccacatatatctggattggaaggaaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaag 250  Q
    |||||||||| || ||||| ||||||||||||||||||| || |||||||||| ||  ||| ||||||||| || |||||||||| ||  ||||||||||    
T  25498932 cctccacatagatatggatcggaaggaaacaaccaccacgcataaacaccagataacttgtgtttttctaacagccgcaaactcaacatccgcaaggaag 25499031  T
Q  251 aa 252  Q
    ||    
T  25499032 aa 25499033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 227 - 338
Target Start/End: Original strand, 38258950 - 38259061
Alignment:
Q  227 gcaaactcagcactcgcaaggaagaaaacaacatcgtcgcaactattataccaaaaccaccaccaacatctcctattaactccaaaaccgagacttacct 326  Q
    |||||||||| || ||||||||||||||||||| |  |||| |||   ||||||||||||||| | || ||||| ||| | |||| ||||||||||||||    
T  38258950 gcaaactcagtacccgcaaggaagaaaacaacaccaccgcagctaaagtaccaaaaccaccacaatcacctcctcttaccaccaacaccgagacttacct 38259049  T
Q  327 caccactgtcac 338  Q
    |||||| |||||    
T  38259050 caccaccgtcac 38259061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 51056935 - 51056861
Alignment:
Q  11 acatcaacaaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttgaagac 85  Q
    ||||| |||||||||||||||||| |||| |||||  || ||||||||||||||| |||| ||||||||||||||    
T  51056935 acatcgacaaaccaccagataacatagtaatcaaatcgggtgagaaggttatgatcgaactcaaccgttgaagac 51056861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 38258783 - 38258847
Alignment:
Q  17 acaaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttga 81  Q
    |||||||||||||||| || |||||| ||| ||||||||||||| |||| |||||||||||||||    
T  38258783 acaaaccaccagataatagggtagtcgaaccggatgagaaggttctgatcgaacccaaccgttga 38258847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 25498791 - 25498865
Alignment:
Q  11 acatcaacaaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttgaagac 85  Q
    ||||| ||||||||| |||||| ||||||||| ||| |||||| |||||| |||| ||| |||||||||||||||    
T  25498791 acatcgacaaaccactagataatagagtagtcgaaccggatgaaaaggttctgatcgaaaccaaccgttgaagac 25498865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 49358685 - 49358718
Alignment:
Q  173 aaggaaacaaccaccacacaaaaacaccagacaa 206  Q
    ||||||||||||||||||||||||||| ||||||    
T  49358685 aaggaaacaaccaccacacaaaaacactagacaa 49358718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 49358536 - 49358604
Alignment:
Q  17 acaaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttgaagac 85  Q
    |||| ||||||||||||||||||||| ||   || ||||||||| |||| |||||||||  ||||||||    
T  49358536 acaatccaccagataacagagtagtcgaatcagacgagaaggttctgatcgaacccaactattgaagac 49358604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 151 - 332
Target Start/End: Complemental strand, 47404 - 47223
Alignment:
Q  151 cctccacatatatctggattggaaggaaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaag 250  Q
    |||||||||| ||||||||  |||||||||||||||||||| ||  |||||| ||| |||| ||||||||| ||||||||||||||||| ||||||||||    
T  47404 cctccacatagatctggatcagaaggaaacaaccaccacacgaattcaccaggcaacctgtgtttttctaacagtcgcaaactcagcacccgcaaggaag 47305  T
Q  251 aaaacaacatcgtcgcaactattataccaaaaccaccaccaacatctcctattaactccaaaaccgagacttacctcaccac 332  Q
    |||||| ||||| |||  |||   ||||||||||||||||| ||  |||| ||| | |||| ||||||||||||||| ||||    
T  47304 aaaacatcatcgccgcggctacagtaccaaaaccaccaccatcacatcctcttaccaccaagaccgagacttacctcgccac 47223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 47544 - 47470
Alignment:
Q  11 acatcaacaaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttgaagac 85  Q
    ||||| |||| ||||||||||||||||||||| ||| ||||||||  |||||||| |||||||||||||||||||    
T  47544 acatcgacaacccaccagataacagagtagtcgaaccggatgagatagttatgatcgaacccaaccgttgaagac 47470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 22696637 - 22696740
Alignment:
Q  151 cctccacatatatctggattggaaggaaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaag 250  Q
    |||||||||| |||||||| |||||||||||||||||||||| |||||||||| || |||| ||||||||| || |||||||||||||| ||||||||||    
T  22696637 cctccacatagatctggatcggaaggaaacaaccaccacacataaacaccagataacctgtgtttttctaacagccgcaaactcagcacccgcaaggaag 22696736  T
Q  251 aaaa 254  Q
    ||||    
T  22696737 aaaa 22696740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 162 - 254
Target Start/End: Complemental strand, 34502968 - 34502876
Alignment:
Q  162 atctggattggaaggaaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaagaaaa 254  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| |||| |||| |||| |  |||||||||||||| ||||||||||||||    
T  34502968 atctggattggaaggaaacaacgaccacacaaaaacaacagacaacctgtgttttactaacaaccgcaaactcagcacccgcaaggaagaaaa 34502876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 22696503 - 22696571
Alignment:
Q  17 acaaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttgaagac 85  Q
    |||||||||||||||| ||||||||| ||| |||||| ||||||||||| |||||||||||||||||||    
T  22696503 acaaaccaccagataatagagtagtcgaaccggatgaaaaggttatgatcgaacccaaccgttgaagac 22696571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 34503119 - 34503045
Alignment:
Q  11 acatcaacaaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttgaagac 85  Q
    |||||| ||||||||||||||||||||||||| ||| || | |||||||| | || ||| |||||||||||||||    
T  34503119 acatcagcaaaccaccagataacagagtagtcgaacaggcttagaaggttcttatcgaaaccaaccgttgaagac 34503045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 24045649 - 24045609
Alignment:
Q  17 acaaaccaccagataacagagtagtcaaactggatgagaag 57  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  24045649 acaaaccaccagataacagagtagtcgaaccggatgagaag 24045609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 177 - 329
Target Start/End: Complemental strand, 36057791 - 36057639
Alignment:
Q  177 aaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaagaaaacaacatcgtcgcaactattata 276  Q
    ||||||||| ||||||||||||||||||||  ||| ||||||||| || |||||||||||||  | |||||||||||||| || || |||| |||  |||    
T  36057791 aaacaaccatcacacaaaaacaccagacaacttgtgtttttctaacagccgcaaactcagcatccacaaggaagaaaacagcaccgccgcagctacaata 36057692  T
Q  277 ccaaaaccaccaccaacatctcctattaactccaaaaccgagacttacctcac 329  Q
    ||||||| ||||||| || ||| | ||| | |||||| |||||||||||||||    
T  36057691 ccaaaacaaccaccatcacctcatcttaccaccaaaatcgagacttacctcac 36057639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 177 - 329
Target Start/End: Complemental strand, 36058919 - 36058767
Alignment:
Q  177 aaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaagaaaacaacatcgtcgcaactattata 276  Q
    ||||||||| ||||||||||||||||||||  ||| ||||||||| || |||||||||||||  | |||||||||||||| || || |||| |||  |||    
T  36058919 aaacaaccatcacacaaaaacaccagacaacttgtgtttttctaacagccgcaaactcagcatccacaaggaagaaaacagcaccgccgcagctacaata 36058820  T
Q  277 ccaaaaccaccaccaacatctcctattaactccaaaaccgagacttacctcac 329  Q
    ||||||| ||||||| || ||| | ||| | |||||| |||||||||||||||    
T  36058819 ccaaaacaaccaccatcacctcatcttaccaccaaaatcgagacttacctcac 36058767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 32946903 - 32946800
Alignment:
Q  151 cctccacatatatctggattggaaggaaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaag 250  Q
    |||||||||| || |||||  ||||||||||||||||||||||||||||||||||| |||| ||||||||| ||  ||||||| ||||| ||||||||||    
T  32946903 cctccacatagatttggatcagaaggaaacaaccaccacacaaaaacaccagacaacctgtgtttttctaacagctgcaaacttagcacccgcaaggaag 32946804  T
Q  251 aaaa 254  Q
    ||||    
T  32946803 aaaa 32946800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 203 - 360
Target Start/End: Original strand, 27109901 - 27110058
Alignment:
Q  203 acaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaagaaaacaacatcgtcgcaactattataccaaaaccaccaccaacatctcctat 302  Q
    |||| |||| ||||||||| || |||||||||||||  | |||||||||||| | || || |||| |||  ||| |||||||||||||| || ||||| |    
T  27109901 acaacctgtgtttttctaacaggcgcaaactcagcaaccacaaggaagaaaatagcaccgccgcagctacaatatcaaaaccaccaccatcacctcctct 27110000  T
Q  303 taactccaaaaccgagacttacctcaccactgtcaccatctcacaccaccatcacttc 360  Q
    || | |||||||||| ||||||||||||||  ||||||  ||||||||||||||||||    
T  27110001 taccaccaaaaccgaaacttacctcaccaccatcaccaggtcacaccaccatcacttc 27110058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 27109801 - 27109875
Alignment:
Q  11 acatcaacaaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttgaagac 85  Q
    ||||| |||||||||||||||||||||||||| ||| ||||||||| ||| |||| ||||| |||||||||||||    
T  27109801 acatcgacaaaccaccagataacagagtagtcgaaccggatgagaatgttctgatcgaaccaaaccgttgaagac 27109875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 32947027 - 32946969
Alignment:
Q  27 agataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttgaagac 85  Q
    |||||| ||||||||| ||| ||||||||||||| |||| |||||||||||||||||||    
T  32947027 agataatagagtagtcgaaccggatgagaaggttctgatcgaacccaaccgttgaagac 32946969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 20519108 - 20519211
Alignment:
Q  151 cctccacatatatctggattggaaggaaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaag 250  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||  ||| ||||||||| |  |||||||||||||| | ||||||||    
T  20519108 cctccacatagatctggatcggaaggaaacaaccaccacacaaaaactccagacaacttgtgtttttctaacaaccgcaaactcagcacccacaaggaag 20519207  T
Q  251 aaaa 254  Q
    ||||    
T  20519208 aaaa 20519211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 151 - 251
Target Start/End: Complemental strand, 38149487 - 38149387
Alignment:
Q  151 cctccacatatatctggattggaaggaaacaaccaccacacaaaaacaccagacaatctgtatttttctaagagtcgcaaactcagcactcgcaaggaag 250  Q
    |||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||  ||| |||||| || |  |||||||||||||| | ||||||||    
T  38149487 cctccatatagatctggatcggaaggaaacaaccaccacacaaaaacaccagacaacatgtgtttttccaacaaccgcaaactcagcacccacaaggaag 38149388  T
Q  251 a 251  Q
    |    
T  38149387 a 38149387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 20518976 - 20519042
Alignment:
Q  19 aaaccaccagataacagagtagtcaaactggatgagaaggttatgattgaacccaaccgttgaagac 85  Q
    |||||||||||||| ||||||||| ||| ||||||||| ||| |||| |||||||||||||||||||    
T  20518976 aaaccaccagataaaagagtagtcgaaccggatgagaatgttctgatcgaacccaaccgttgaagac 20519042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 32919487 - 32919437
Alignment:
Q  151 cctccacatatatctggattggaaggaaacaaccaccacacaaaaacacca 201  Q
    |||||||||| |||||||| ||||||||||||||||||||||||| |||||    
T  32919487 cctccacatagatctggatcggaaggaaacaaccaccacacaaaagcacca 32919437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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