View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8923_low_13 (Length: 425)
Name: NF8923_low_13
Description: NF8923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8923_low_13 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 2 - 416
Target Start/End: Complemental strand, 56526531 - 56526117
Alignment:
| Q |
2 |
atgagatggacatcttcagtgaaggcaattaaatgatcatgaaaacatgttaacaataggttgtagagtcgatgagacacatttcgcaccaatcgtctgt |
101 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56526531 |
atgatatgaacatcttcagtgaaggcaattaaatgatcatgaaaacatgttaacaataggttgtagagtcgatgagacacatttcgcaccaatcgtctgt |
56526432 |
T |
|
| Q |
102 |
cacgaactgtgatcctgcaggataccaatatctttagtgaaggtaattaaacaatcatgaaaacaggttaacagacttatagatggtaaattaaatggac |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
56526431 |
cacgaactgtgatcctgcaggataccaatatctttagtgaaggtaattaaacaatcatgaaaacaggttaacagacttatagatggtaaattaaagggac |
56526332 |
T |
|
| Q |
202 |
accttgcgacacaaatgacaaaatcaactgatagggaagagagggggcaggttgtttcaatcccttgggattgggtttgggcaccattagctagagtcac |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56526331 |
accttgcgacacaaatgacaaaatcaactgatagggaagagagggggcaggttgtttcaatcccttgggattgggtttgggcaccattagctagagtcac |
56526232 |
T |
|
| Q |
302 |
aatacgttataaccagatgtagaaaaagaggagaaaagaggagaaaaattccttctttcgatcttgcaaactccataccgagaaagtattttaattttcc |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56526231 |
aatacgttataaccagatgtagaaaaagaggagaaaagaggagaaaaattccttctttcgatcttgcaaactccataccgagaaagtattttaattttcc |
56526132 |
T |
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| Q |
402 |
aagatccttgatgtc |
416 |
Q |
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||||||||||||||| |
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| T |
56526131 |
aagatccttgatgtc |
56526117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 346 - 416
Target Start/End: Complemental strand, 27266756 - 27266686
Alignment:
| Q |
346 |
aaaattccttctttcgatcttgcaaactccataccgagaaagtattttaattttccaagatccttgatgtc |
416 |
Q |
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| T |
27266756 |
aaaattccttctttcgatcttgcaaactccataccgagaaagtattttaattttccaagatccttgatgtc |
27266686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 346 - 416
Target Start/End: Original strand, 29635005 - 29635075
Alignment:
| Q |
346 |
aaaattccttctttcgatcttgcaaactccataccgagaaagtattttaattttccaagatccttgatgtc |
416 |
Q |
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| T |
29635005 |
aaaattccttctttcgatcttgcaaactccataccgagaaagtattttaattttccaagatccttgatgtc |
29635075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 346 - 416
Target Start/End: Complemental strand, 296658 - 296588
Alignment:
| Q |
346 |
aaaattccttctttcgatcttgcaaactccataccgagaaagtattttaattttccaagatccttgatgtc |
416 |
Q |
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| T |
296658 |
aaaattccttctttcgatcttgcaaactccataccgagaaagtattttaattttccaagatccttgatgtc |
296588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 346 - 416
Target Start/End: Original strand, 20754052 - 20754122
Alignment:
| Q |
346 |
aaaattccttctttcgatcttgcaaactccataccgagaaagtattttaattttccaagatccttgatgtc |
416 |
Q |
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| T |
20754052 |
aaaattccttctttcgatcttgcaaactccataccgagaaagtattttaattttccaagatccttgatgtc |
20754122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 346 - 416
Target Start/End: Complemental strand, 28275062 - 28274992
Alignment:
| Q |
346 |
aaaattccttctttcgatcttgcaaactccataccgagaaagtattttaattttccaagatccttgatgtc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28275062 |
aaaattccttctttcgatcttgcaaactccataccgagaaagtattttaattttccaagatccttgatgtc |
28274992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 346 - 416
Target Start/End: Complemental strand, 28353812 - 28353742
Alignment:
| Q |
346 |
aaaattccttctttcgatcttgcaaactccataccgagaaagtattttaattttccaagatccttgatgtc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28353812 |
aaaattccttctttcgatcttgcaaactccataccgagaaagtattttaattttccaagatccttgatgtc |
28353742 |
T |
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