View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8923_low_14 (Length: 345)
Name: NF8923_low_14
Description: NF8923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8923_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 335
Target Start/End: Complemental strand, 43371084 - 43370766
Alignment:
| Q |
17 |
atgatttaatagagtctacattgtgctcaggatgtatcgcagcaacctcttcgtcggtcattactgtcatctgttggaacaattctacgatatttgcccc |
116 |
Q |
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| T |
43371084 |
atgatttaatagagtctacattgtgctcaggatgtatcgcagcaacctcttcgtcggtcattactgtcatctgttggaacaattctacgatatttgcccc |
43370985 |
T |
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| Q |
117 |
catgtaagaatcaggcccataccatatgctcaaatcaggcacttgagcaaatgcctgcataaaaggagataaatatatcattttaagaaagaagcactaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43370984 |
catgtaagaatcaggcccataccatatgctcaaatcaggcacttgagcaaatgcctgcataaaaggagataaatatatcattttaagaaagaagcactaa |
43370885 |
T |
|
| Q |
217 |
aactagctttgttgcggtcatcgcgtgatgtactcatacaacaaatacaaggacaaagaggaatacagaaaagtttgcatctaactaacttgtagaatag |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43370884 |
aactagctttgttgcggtcatcgcgtgatgtactcatacgacaaatacaaggacaaagaggaatacagaaaagtttgcatctaactaacttgtagaatag |
43370785 |
T |
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| Q |
317 |
tctggataacatttgatga |
335 |
Q |
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||||||||||||||||||| |
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| T |
43370784 |
tctggataacatttgatga |
43370766 |
T |
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