View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8923_low_17 (Length: 330)
Name: NF8923_low_17
Description: NF8923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8923_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 21743806 - 21743541
Alignment:
| Q |
1 |
gtagtagtggtggaagcattgataagcatctagattcagggaaatatgttaggtatacttctgaacaagttgaagcattggaaagggtttatgctgagtg |
100 |
Q |
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| T |
21743806 |
gtagtagtggtggaagcattgataagcatctagattcagggaaatatgttaggtatacttctgaacaagttgaagcattggaaagggtgtatgctgagtg |
21743707 |
T |
|
| Q |
101 |
tcctaagcctagttccatgagaagacaacaattgattcgtgagtgttctattctttccaacatagaacctaaacagatcaaggtttggttccaaaatcga |
200 |
Q |
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| T |
21743706 |
tcctaagcctagttccatgagaagacaacaattgattcgtgagtgtcctattctttccaacattgaacccaaacagatcaaggtttggttccaaaatcga |
21743607 |
T |
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| Q |
201 |
aggtattgaaaactttggtttctacaagtttgagcttcattggtatatgtgaaatcagcgcttaga |
266 |
Q |
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| T |
21743606 |
aggtattgaaaactttggtttctgcaagttggagcttcattggtatatgtgaaatcagcacttaga |
21743541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 21743510 - 21743478
Alignment:
| Q |
298 |
caggtgtagagagaagcagagaaaagaggcttc |
330 |
Q |
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| T |
21743510 |
caggtgtagagagaagcagagaaaagaggcttc |
21743478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 42 - 205
Target Start/End: Complemental strand, 11287679 - 11287516
Alignment:
| Q |
42 |
aaatatgttaggtatacttctgaacaagttgaagcattggaaagggtttatgctgagtgtcctaagcctagttccatgagaagacaacaattgattcgtg |
141 |
Q |
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| T |
11287679 |
aaatatgtgaggtacactcctgaacaagttgaagctttggagagagtttattcagaatgtcctaagcctagttctttgagaagacaacaactcattagag |
11287580 |
T |
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| Q |
142 |
agtgttctattctttccaacatagaacctaaacagatcaaggtttggttccaaaatcgaaggta |
205 |
Q |
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| T |
11287579 |
aatgtcctatcctttctaacattgaacctaaacagatcaaagtttggtttcaaaaccgaaggta |
11287516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 190
Target Start/End: Original strand, 40312752 - 40312900
Alignment:
| Q |
42 |
aaatatgttaggtatacttctgaacaagttgaagcattggaaagggtttatgctgagtgtcctaagcctagttccatgagaagacaacaattgattcgtg |
141 |
Q |
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| T |
40312752 |
aaatatgtgaggtacactgctgaacagattgaagctttggaaaaggtttatgtggaatgccctaagcctagttcattgagaaggcaacagctgattcggg |
40312851 |
T |
|
| Q |
142 |
agtgttctattctttccaacatagaacctaaacagatcaaggtttggtt |
190 |
Q |
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| T |
40312852 |
agtgcccggttctggccaacattgagcctaagcagatcaaggtttggtt |
40312900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 43511382 - 43511310
Alignment:
| Q |
135 |
attcgtgagtgttctattctttccaacatagaacctaaacagatcaaggtttggttccaaaatcgaaggtatt |
207 |
Q |
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| T |
43511382 |
attcgagagtgtcctattctctctcatattgaacctaaacagatcaaagtttggttccaaaatagaaggtatt |
43511310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 40313021 - 40313053
Alignment:
| Q |
298 |
caggtgtagagagaagcagagaaaagaggcttc |
330 |
Q |
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| T |
40313021 |
caggtgtagggagaagcagagaaaagaggcttc |
40313053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 51354406 - 51354491
Alignment:
| Q |
121 |
gaagacaacaattgattcgtgagtgttctattctttccaacatagaacctaaacagatcaaggtttggttccaaaatcgaaggtat |
206 |
Q |
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||||||||||| | ||| | |||||| ||||||| || | || ||||||||||||||||| ||||||||||| || |||||||| |
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| T |
51354406 |
gaagacaacaactcattagagagtgtcctattctctctcatattgaacctaaacagatcaaagtttggttccagaacagaaggtat |
51354491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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