View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8923_low_18 (Length: 325)
Name: NF8923_low_18
Description: NF8923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8923_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 307
Target Start/End: Complemental strand, 4664351 - 4664058
Alignment:
| Q |
16 |
acatcaatggcctttgctattgtttgaacaactaaaggaacggtgtctcgaagatgaataatatctccagcaaaggcagcatagttataatcattaccac |
115 |
Q |
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| T |
4664351 |
acatcaatggcctttgctattgtttgaacaactaaaggaacggtgtctcgaagatgagtaatatctccagcaaaggcagcatagttataatcattaccac |
4664252 |
T |
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| Q |
116 |
ctatctctcccaccacgaagagtgaccttttgaagtagctatcacaatctgtgacatagcagaggattnnnnnnng--ttgttattggaaaatttcatac |
213 |
Q |
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| T |
4664251 |
ctatctctcccaccacgaagagtgaccttttgaagtagctatcacaatctgtgacatagcagaggattaaaaaaagttttgttattggaaaatttcatac |
4664152 |
T |
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| Q |
214 |
aatagtttcatttgggatggtcaatgaatgttatatgttaccttgtttagttgtacaaaaggaaggtttcagcttcttaaaccagccaagctga |
307 |
Q |
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| T |
4664151 |
aatggtttcatttgggatggtcaatgaatgttatatgttaccttgtttagttgtacaaaaggaaggcttcagcttcttgaaccagccaagctga |
4664058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 4667788 - 4667505
Alignment:
| Q |
19 |
tcaatggcctttgctattgtttgaacaactaaaggaacggtgtctcgaagatgaataatatctccagcaaaggcagcatagttataatcattaccaccta |
118 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4667788 |
tcaatgacctttgctattgtttgaacaactaaaggaacggtgtctcgaagatgagtaatatctccagcaaaggcagcatagttataatcattaccaccta |
4667689 |
T |
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| Q |
119 |
tctctcccaccacgaagagtgaccttttgaagtagctatcacaatctgtgacatagcagaggatt---nnnnnnngttgttattggaaaatttcatacaa |
215 |
Q |
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| T |
4667688 |
tctctcccaccacaaagagtggccttttgaagtagctatcacaatctgtgacatagcagaggattaaaaacaagttttgttattgg-aaatttcatacaa |
4667590 |
T |
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| Q |
216 |
tagtttcatttgggatggtcaatgaatgttatatgttaccttgtttagttgtacaaaaggaaggtttcagcttcttaaaccagccaag |
303 |
Q |
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| T |
4667589 |
tagtttcatttgggatggtcaatga---ctcaatgttaccttgtttagttgtgcacaaggaaggtttcagcttcttgaaccagccaag |
4667505 |
T |
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