View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8923_low_24 (Length: 297)

Name: NF8923_low_24
Description: NF8923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8923_low_24
NF8923_low_24
[»] chr4 (12 HSPs)
chr4 (1-282)||(20168466-20168747)
chr4 (1-282)||(48464525-48464806)
chr4 (22-282)||(3087420-3087680)
chr4 (19-282)||(10224776-10225039)
chr4 (1-282)||(32700513-32700780)
chr4 (3-161)||(19134909-19135067)
chr4 (170-282)||(5053776-5053888)
chr4 (86-210)||(14981059-14981183)
chr4 (1-33)||(3334343-3334375)
chr4 (3-31)||(10230907-10230935)
chr4 (1-33)||(33952343-33952375)
chr4 (1-33)||(55515115-55515147)
[»] chr7 (7 HSPs)
chr7 (6-282)||(26844376-26844652)
chr7 (1-282)||(46488763-46489044)
chr7 (19-282)||(37169094-37169357)
chr7 (1-282)||(46421847-46422128)
chr7 (19-203)||(34831190-34831374)
chr7 (1-31)||(40219181-40219211)
chr7 (1-33)||(43963149-43963181)
[»] chr3 (7 HSPs)
chr3 (2-282)||(26527246-26527526)
chr3 (1-282)||(13102771-13103052)
chr3 (22-282)||(24743136-24743396)
chr3 (19-201)||(53345865-53346047)
chr3 (19-134)||(33854683-33854798)
chr3 (80-126)||(40025479-40025525)
chr3 (17-70)||(51969725-51969778)
[»] chr2 (21 HSPs)
chr2 (2-282)||(44338458-44338738)
chr2 (2-282)||(1734918-1735198)
chr2 (1-282)||(36631362-36631643)
chr2 (1-282)||(18813957-18814238)
chr2 (19-282)||(34509067-34509330)
chr2 (22-282)||(14146439-14146699)
chr2 (19-282)||(11751972-11752235)
chr2 (19-282)||(37013920-37014183)
chr2 (19-282)||(43801018-43801281)
chr2 (19-210)||(33372577-33372768)
chr2 (19-210)||(40822265-40822456)
chr2 (21-180)||(8905679-8905832)
chr2 (19-195)||(33372391-33372567)
chr2 (19-195)||(40822466-40822642)
chr2 (1-261)||(44802821-44803082)
chr2 (17-282)||(6000223-6000484)
chr2 (22-81)||(35013626-35013685)
chr2 (244-282)||(8906327-8906365)
chr2 (1-36)||(35012989-35013024)
chr2 (3-33)||(34506814-34506844)
chr2 (2-31)||(9982238-9982267)
[»] chr8 (5 HSPs)
chr8 (2-282)||(8597891-8598171)
chr8 (1-282)||(31304070-31304350)
chr8 (22-282)||(17962960-17963220)
chr8 (19-282)||(42613835-42614098)
chr8 (1-60)||(11957038-11957098)
[»] chr6 (8 HSPs)
chr6 (2-282)||(22028307-22028587)
chr6 (19-282)||(26338616-26338879)
chr6 (1-112)||(34677745-34677856)
chr6 (1-107)||(24841555-24841660)
chr6 (1-85)||(24841691-24841775)
chr6 (1-33)||(13047511-13047543)
chr6 (3-31)||(26334503-26334531)
chr6 (1-33)||(34677353-34677385)
[»] chr1 (11 HSPs)
chr1 (1-282)||(30349834-30350115)
chr1 (6-282)||(47477657-47477933)
chr1 (19-282)||(6406678-6406941)
chr1 (19-282)||(39639292-39639555)
chr1 (19-282)||(51746762-51747025)
chr1 (21-256)||(2227635-2227870)
chr1 (80-126)||(49276229-49276275)
chr1 (1-31)||(49617476-49617506)
chr1 (1-31)||(49617607-49617637)
chr1 (1-36)||(31151588-31151624)
chr1 (3-31)||(35960483-35960511)
[»] chr5 (10 HSPs)
chr5 (19-282)||(19684752-19685015)
chr5 (19-282)||(20090832-20091095)
chr5 (19-282)||(30820661-30820924)
chr5 (19-282)||(766307-766570)
chr5 (19-282)||(19425985-19426248)
chr5 (19-282)||(1378444-1378706)
chr5 (21-179)||(34003302-34003460)
chr5 (17-282)||(30666711-30666973)
chr5 (21-167)||(37987840-37987979)
chr5 (86-210)||(38842119-38842242)
[»] scaffold0504 (2 HSPs)
scaffold0504 (1-282)||(6319-6599)
scaffold0504 (1-33)||(2034-2066)
[»] scaffold0586 (1 HSPs)
scaffold0586 (1-31)||(8368-8398)
[»] scaffold0170 (1 HSPs)
scaffold0170 (1-31)||(20361-20391)


Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 20168466 - 20168747
Alignment:
Q  1 caaataaaataccataaaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgtt 100  Q
    ||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||    
T  20168466 caaattaaatatcataatatctacaattattataaatgcccggctgtcccacaccctcgtcttcgacgatttcttccgcgatttacttgagggtcatgtt 20168565  T
Q  101 ggtcttcgtcattgttatctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaa 200  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20168566 ggtcttcgtcattgttatctgtagctgattgtatttgactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaa 20168665  T
Q  201 ttgttcattgttattgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20168666 ttgttcattgttgttgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 20168747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 48464525 - 48464806
Alignment:
Q  1 caaataaaataccataaaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgtt 100  Q
    |||||||||| ||| || ||||| ||||||||||||||  | |||||||||||||| |||||||||||||  |||||||||||||||||||| |||||||    
T  48464525 caaataaaattccacaatatctataattattataaatgttcggctgtcccacacccccgtcttcgacgatttcttccgcgatttacttgagggtcatgtt 48464624  T
Q  101 ggtcttcgtcattgttatctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaa 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48464625 ggtcttcgtcattgttatctgtagttgattgtatttgactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccataaa 48464724  T
Q  201 ttgttcattgttattgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48464725 ttgttcattgttgttgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 48464806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 282
Target Start/End: Complemental strand, 3087680 - 3087420
Alignment:
Q  22 tacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttatctg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3087680 tacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgtcttccgcgatttacttgagggtcatgttggtcttcgtcattgttatctg 3087581  T
Q  122 tagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgttattgaacga 221  Q
    |||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||   |  |||||    
T  3087580 tagtcgattgtatttgactaccataacccaacgacaacgacacatcgtgttcccttgttggccatcccatatccagaaattgttcattggagtccaacga 3087481  T
Q  222 agccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||| ||||||||| ||||||| || |||||||||| ||||||||||||||||||    
T  3087480 agccggagagtagtgagatagtaggttttttcgtgttggtgggtggttgtagttttggttg 3087420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 10224776 - 10225039
Alignment:
Q  19 atctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttat 118  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||||||||||||  |||||||||||||||||||| | |||||||||||||||||| ||||    
T  10224776 atctacaatgattataaatgcccggctgtcccacaccttcgtcttcgacgatctcttccgcgatttacttgagggttatgttggtcttcgtcatttttat 10224875  T
Q  119 ctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgttattgaa 218  Q
     ||||||||||||||| | |||||||||||||| ||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||   || ||    
T  10224876 ttgtagttgattgtatctgactaccataacccagtgacaacgacacatcgtgttctcttgttggccatcccatatccagaaattgttcattggagttcaa 10224975  T
Q  219 cgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10224976 cgaagtcggagagaagtgagataataggtttgttggtgttggtgggtggttgtagttttggttg 10225039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 32700780 - 32700513
Alignment:
Q  1 caaataaaata-ccataaaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgt 99  Q
    ||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||            |||||||||  ||||||    
T  32700780 caaataaaataaccataaaatctacaattattacaaatgccctcctgtcccacaccctcgtctttgacgat------------ttacttgagcgtcatgt 32700693  T
Q  100 tggtcttcgtcattgttatctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaa 199  Q
    |||  |||||||||||||||||||||||||||| | | |||||||||||||||||  |||||||||||||||||||||||| ||||||| |||| || ||    
T  32700692 tggatttcgtcattgttatctgtagttgattgtgtctgactaccataacccaatgttaacgacacatcgtgttcccttgttggccatcccatattcacaa 32700593  T
Q  200 attgttcattgttattgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||||   || |||| | |||||||||||||||||| |||||||||||||||||||   ||||||||||||||||||    
T  32700592 attgttcattggagttcaacgcatccggagagaagtgagatagtaggtttgttggtgttggt---tggttgtagttttggttg 32700513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 19134909 - 19135067
Alignment:
Q  3 aataaaataccataaaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttgg 102  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| | |||||||    
T  19134909 aataaaataccataaaatctacaatgattataaatgcccggctgtcccacaccctcgtcttcgacgatctcttccgcgatttacttgagggttatgttgg 19135008  T
Q  103 tcttcgtcattgttatctgtagttgattgtatttaactaccataacccaatgacaacga 161  Q
    |||||||||||||||| ||||||||||||||| | |||||||||||||| |||||||||    
T  19135009 tcttcgtcattgttatttgtagttgattgtatctgactaccataacccagtgacaacga 19135067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 170 - 282
Target Start/End: Original strand, 5053776 - 5053888
Alignment:
Q  170 gttcccttgtttgccatccaatatccagaaattgttcattgttattgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggtt 269  Q
    |||||||||||| |||||| |||||||||||||||||||||   || ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5053776 gttcccttgttttccatcccatatccagaaattgttcattggagttcaacgaagccggagagaagtgagataataggtttgttggtgttggtgggtggtt 5053875  T
Q  270 gtagttttggttg 282  Q
    |||||||||||||    
T  5053876 gtagttttggttg 5053888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 14981059 - 14981183
Alignment:
Q  86 cttgaggatcatgttggtcttcgtcattgttatctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgcca 185  Q
    ||||||| |||||||||| ||| ||||  |||| |||||||| || |||||  |||| || |||||| | ||| |||||||||||||| |||||  ||||    
T  14981059 cttgagggtcatgttggtgttcatcatcattatttgtagttggttctatttgcctactatcacccaacgtcaatgacacatcgtgttctcttgtaggcca 14981158  T
Q  186 tccaatatccagaaattgttcattg 210  Q
    ||| | || ||||||||| ||||||    
T  14981159 tccgaaattcagaaattgctcattg 14981183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3334375 - 3334343
Alignment:
Q  1 caaataaaataccataaaatctacaattattat 33  Q
    ||||||||| |||||||||||||||||||||||    
T  3334375 caaataaaacaccataaaatctacaattattat 3334343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 10230935 - 10230907
Alignment:
Q  3 aataaaataccataaaatctacaattatt 31  Q
    |||||||||||||||||||||||||||||    
T  10230935 aataaaataccataaaatctacaattatt 10230907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 33952343 - 33952375
Alignment:
Q  1 caaataaaataccataaaatctacaattattat 33  Q
    ||||||||| |||||||||||||||||||||||    
T  33952343 caaataaaacaccataaaatctacaattattat 33952375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 55515115 - 55515147
Alignment:
Q  1 caaataaaataccataaaatctacaattattat 33  Q
    ||||||||| |||||||||||||||||||||||    
T  55515115 caaataaaacaccataaaatctacaattattat 55515147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 6 - 282
Target Start/End: Original strand, 26844376 - 26844652
Alignment:
Q  6 aaaataccataaaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtct 105  Q
    ||||||||| || ||||| ||||||||||||||||| |||||||||||||| |||||||||||||  |||||||||||||||||||| ||||||||||||    
T  26844376 aaaataccacaatatctataattattataaatgcccggctgtcccacacccccgtcttcgacgatttcttccgcgatttacttgagggtcatgttggtct 26844475  T
Q  106 tcgtcattgttatctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgtt 205  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26844476 tcgtcattgttatctgtagttgattgtatttgactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgtt 26844575  T
Q  206 cattgttattgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26844576 cattgttgttgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 26844652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 46489044 - 46488763
Alignment:
Q  1 caaataaaataccataaaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgtt 100  Q
    ||||| ||||| ||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||  |||||||||||||||||||| |||||||    
T  46489044 caaattaaatatcataatatctacaattattataaatgcccgactgtcccacaccctcgtcttcgacgatttcttccgcgatttacttgagggtcatgtt 46488945  T
Q  101 ggtcttcgtcattgttatctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaa 200  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  46488944 ggtcttcgtcattgttatctgtagctgattgtatttgactaccataacctaatgacaacgatacatcgtgttcccttgtttgccatccaatatccagaaa 46488845  T
Q  201 ttgttcattgttattgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46488844 ttgttcattgtcgttgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 46488763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 37169094 - 37169357
Alignment:
Q  19 atctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttat 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| |||||||    
T  37169094 atctacaattattataaatgcccggctgtcccacaccctcgtcttcgacgatttcttccgcgatttacttgagggtcatgttggtcttcgtcgttgttat 37169193  T
Q  119 ctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgttattgaa 218  Q
    ||| || ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| ||| |    || ||    
T  37169194 ctgcagctgattgtatttgactaccataacccaatgacaatgacacatcgtgttcccttgttggccatcccatatccagaaattgatcactagagttcaa 37169293  T
Q  219 cgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37169294 cgaagccggagaaaagtgagataataggtttgttggtgttggtgggtggttgtagttttggttg 37169357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 46422128 - 46421847
Alignment:
Q  1 caaataaaat-accataaaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgt 99  Q
    |||||||||| |||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||  ||||| |||||||||||||  || |||    
T  46422128 caaataaaattaccataaaatctacaattattaaaaatgccctcctatcccacaccctcgtcttcgacgatttcttccacgatttacttgagagtcgtgt 46422029  T
Q  100 tggtcttcgtcattgttatctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaa 199  Q
    |||||||||||||| |||| ||||||||||||||| | |||||||||| |||| |||||||||||||||||||| || ||| ||||||| ||||| ||||    
T  46422028 tggtcttcgtcattattatatgtagttgattgtatctgactaccataatccaacgacaacgacacatcgtgttctctggttggccatcccatatctagaa 46421929  T
Q  200 attgttcattgttattgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||||   || |||| |||||||||||||||||||| |||||||||||| ||||||||  ||||| |||||||||||    
T  46421928 attgttcattggagttcaacg-agccggagagaagtgagatagtaggtttgttggggttggtggggggttgcagttttggttg 46421847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 34831374 - 34831190
Alignment:
Q  19 atctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttat 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| |||||||    
T  34831374 atctacaattattataaatgcccggctgtcccacaccctcgtcttcgacgatttcttccgcgatttacttgagggtcatgttggtcttcgtcgttgttat 34831275  T
Q  119 ctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattg 203  Q
    ||| || ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||    
T  34831274 ctgcagctgattgtatttgactaccataacccaatgacaatgacacatcgtgttcccttgttggccatcccatatccagaaattg 34831190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 40219181 - 40219211
Alignment:
Q  1 caaataaaataccataaaatctacaattatt 31  Q
    |||||||||||||||||||||||||||||||    
T  40219181 caaataaaataccataaaatctacaattatt 40219211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 43963149 - 43963181
Alignment:
Q  1 caaataaaataccataaaatctacaattattat 33  Q
    ||||||||| |||||||||||||||||||||||    
T  43963149 caaataaaacaccataaaatctacaattattat 43963181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 2 - 282
Target Start/End: Complemental strand, 26527526 - 26527246
Alignment:
Q  2 aaataaaataccataaaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttg 101  Q
    |||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||    
T  26527526 aaattaaatatcataatatctacaattattataaatgcccggctgtcccacaccctcgtcttcgacgatttcttccgcgatttacttgagggtcatgttg 26527427  T
Q  102 gtcttcgtcattgttatctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaat 201  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26527426 gtcttcgtcattgttatctgtagctgattgtatttgactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaat 26527327  T
Q  202 tgttcattgttattgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26527326 tgttcattgtcgttgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 26527246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 13102771 - 13103052
Alignment:
Q  1 caaataaaataccataaaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgtt 100  Q
    |||||||||||||| || ||||| ||||||||||||||||| |||||||||||||| |||||| ||||||  |||||||||||||||||| | |||||||    
T  13102771 caaataaaataccacaatatctataattattataaatgcccggctgtcccacacccccgtctttgacgatttcttccgcgatttacttgacggtcatgtt 13102870  T
Q  101 ggtcttcgtcattgttatctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaa 200  Q
    ||||||||||||| |||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||  |||||||||||    
T  13102871 ggtcttcgtcattattatttgtagttgattgtatttgactaccataacccagtgacaacgacacatcgtgttcccttgttggccatctcatatccagaaa 13102970  T
Q  201 ttgttcattgttattgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||| | || ||||||| ||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  13102971 ttgttcattggtgttcaacgaagtcggtgagaagtgagataacaggtttgttggtgttggtgggtggttgtagttttggttg 13103052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 22 - 282
Target Start/End: Original strand, 24743136 - 24743396
Alignment:
Q  22 tacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttatctg 121  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| |||| |||||||||||||| |||||||||||||    
T  24743136 tacaattattataaatgtcctgctgtcccacacccacgtcttcgacgatgtcttccgcgatttactcgagggtcatgttggtcttcatcattgttatctg 24743235  T
Q  122 tagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgttattgaacga 221  Q
    ||||||||||||||| |||||||||| ||||  ||||||| |||||||||||||||||| | ||||| |||||||||||||||||||||   |  |||||    
T  24743236 tagttgattgtatttgactaccataatccaacaacaacgagacatcgtgttcccttgttggtcatcccatatccagaaattgttcattggagtccaacga 24743335  T
Q  222 agccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  24743336 agccggagagaagtgagatagtaggtttcttggtgttggtgggtggttgtagttttggttg 24743396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 53345865 - 53346047
Alignment:
Q  19 atctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttat 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| |||||||    
T  53345865 atctacaattattataaatgcccggctgtcccacaccctcgtcttcgacgatttcttccgcgatttacttgagggtcatgttggtcttcgtcgttgttat 53345964  T
Q  119 ctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaat 201  Q
    ||| || ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||    
T  53345965 ctgcagctgattgtatttgactaccataacccaatgacaatgacacatcgtgttcccttgttggccatcccatatccagaaat 53346047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 33854683 - 33854798
Alignment:
Q  19 atctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttat 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||    
T  33854683 atctacaattattataaatgcccggctgtcccacaccctcgtcttcgacgatgtcttccgcgatttacttgagggttatgttggtcttcgtcattgttat 33854782  T
Q  119 ctgtagttgattgtat 134  Q
    ||||| ||||||||||    
T  33854783 ctgtaattgattgtat 33854798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 40025525 - 40025479
Alignment:
Q  80 gatttacttgaggatcatgttggtcttcgtcattgttatctgtagtt 126  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  40025525 gatttacttgagggtcatgttgggcttcgtcattgttatctgtagtt 40025479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 51969778 - 51969725
Alignment:
Q  17 aaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgat 70  Q
    |||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||    
T  51969778 aaatatacaattattacaaatgtcctcctgtcccacaccctcgtcttcgacgat 51969725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 2 - 282
Target Start/End: Complemental strand, 44338738 - 44338458
Alignment:
Q  2 aaataaaataccataaaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttg 101  Q
    |||| ||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||||||||||||||| ||||||||    
T  44338738 aaattaaatatcataaaatctacaattattataaatgcccggctgtccgacaccctcgtcttcgacgatttcttccgcgatttacttgagggtcatgttg 44338639  T
Q  102 gtcttcgtcattgttatctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaat 201  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44338638 gtcttcgtcattgttatctgtagctgattgtatttgactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaat 44338539  T
Q  202 tgttcattgttattgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44338538 tgttcattgtcgttgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 44338458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 2 - 282
Target Start/End: Original strand, 1734918 - 1735198
Alignment:
Q  2 aaataaaataccataaaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttg 101  Q
    |||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||    
T  1734918 aaattaaatatcataatatctacaattattataaatgcccggctgtcccacaccctcgtcttcgacgatttcttccgcgatttacttgagggtcatgttg 1735017  T
Q  102 gtcttcgtcattgttatctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaat 201  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1735018 gtcttcgtcattgttatctgtatctgattgtatttgactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaat 1735117  T
Q  202 tgttcattgttattgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1735118 tgttaattgtcgttgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 1735198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 36631643 - 36631362
Alignment:
Q  1 caaataaaataccataaaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgtt 100  Q
    ||||| ||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||  |||||||||||||||||||| |||||||    
T  36631643 caaattaaatatcataatatctacaattattataaatgcccggccgtcccacaccctcgtcttcgacgatttcttccgcgatttacttgagggtcatgtt 36631544  T
Q  101 ggtcttcgtcattgttatctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaa 200  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36631543 ggtcttcgtcattgttatctgtagctgattgtatttgactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaa 36631444  T
Q  201 ttgttcattgttattgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||||  ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36631443 ttgttcattgtcgttgaacgaagccgaagagaagtgaaataataggtttgttggtgttggtggatggttgtagttttggttg 36631362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 18814238 - 18813957
Alignment:
Q  1 caaataaaataccataaaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgtt 100  Q
    ||||| ||||| ||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||   ||||| ||||||||||||| |||||||    
T  18814238 caaattaaatatcataatatctacaattattataaatgcctggctgtcccacaccctcgtcttcgacgatttgttccgtgatttacttgagggtcatgtt 18814139  T
Q  101 ggtcttcgtcattgttatctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaa 200  Q
    |||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18814138 ggtcttcgtcattgttatctgtagctgattgtatttgactatcataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatctagaaa 18814039  T
Q  201 ttgttcattgttattgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18814038 ttgttcattgtcgttcaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 18813957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 34509330 - 34509067
Alignment:
Q  19 atctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttat 118  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| | |||||||||||||||||| ||||    
T  34509330 atctacaatgattataaatgcccggctgtcccacaccctcgtcttcgacgatctcttccgcgatttacttgagggttatgttggtcttcgtcattattat 34509231  T
Q  119 ctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgttattgaa 218  Q
     ||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| | || ||    
T  34509230 ttgtagttgattgtatctgactaccataacccagtgacaacgacacatcgtgttcccttgttggccatcccatatccagaaattgttcattggtgttcaa 34509131  T
Q  219 cgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    ||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  34509130 cgaagtcggagagaagtgagataacaggtttgttggtgttggtgggtggttgtagttttggttg 34509067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 282
Target Start/End: Complemental strand, 14146699 - 14146439
Alignment:
Q  22 tacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttatctg 121  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14146699 tacaattattataaatgccctgccgtcccacaccctcgtcttcaacgatgtcttccgcgatttacttgagggtcatgttggtcttcgtcattgttatctg 14146600  T
Q  122 tagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgttattgaacga 221  Q
    |||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||   |  |||||    
T  14146599 tagttgattgtatttggctaccataacccaacgacaacgacacatcgtgttcccttgttggccatcccatatccagaaattattcattggagtccaacga 14146500  T
Q  222 agccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||||| ||||||| || |||||||||||||||||| ||||||||||||||||||    
T  14146499 agccggagagaattgagatagtaagtttgttggtgttggtgggtggttgtagttttggttg 14146439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 11752235 - 11751972
Alignment:
Q  19 atctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttat 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| |||||||    
T  11752235 atctacaattattataaatgcccggctgtcccacaccctcgtcttcgacgatttcttccgcgatttacttgagggtcatgttggtcttcgtcgttgttat 11752136  T
Q  119 ctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgttattgaa 218  Q
    ||| || ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| ||| |    || ||    
T  11752135 ctgcagctgattgtatttgactaccataacccaatgacaatgacacatcgtgttcccttgttggccatcccatatccagaaattgatcactagagttcaa 11752036  T
Q  219 cgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11752035 cgaagccggagaaaagtgagataataggtttgttggtgttggtgggtggttgtagttttggttg 11751972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 37013920 - 37014183
Alignment:
Q  19 atctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttat 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| |||||||    
T  37013920 atctacaattattataaatgcccggctgtcccacaccctcgtcttcgacgatttcttccgcgatttacttgagggtcatgttggtcttcgtcgttgttat 37014019  T
Q  119 ctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgttattgaa 218  Q
    ||| || ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| ||| |    || ||    
T  37014020 ctgcagctgattgtatttgactaccataacccaatgacaatgacacatcgtgttcccttgttggccatcccatatccagaaattgatcagtagagttcaa 37014119  T
Q  219 cgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37014120 cgaagccggagaaaagtgagataataggtttgttggtgttggtgggtggttgtagttttggttg 37014183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 43801018 - 43801281
Alignment:
Q  19 atctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttat 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||| |||||||||||||| ||||||||||||||||| |||||||    
T  43801018 atctacaattattataaatgcccggctgtcccacaccctcgtcttcgacgatttcttccacgatttacttgagggtcatgttggtcttcgtcgttgttat 43801117  T
Q  119 ctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgttattgaa 218  Q
    ||| || ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| ||  |    || ||    
T  43801118 ctgcagctgattgtatttgactaccataacccaatgacaatgacacatcgtgttcccttgttggccatcccatatccagaaattgatccctagagttcaa 43801217  T
Q  219 cgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43801218 cgaagccggagaaaagtgagataataggtttgttggtgttggtgggtggttgtagttttggttg 43801281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 33372768 - 33372577
Alignment:
Q  19 atctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttat 118  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||||||||||||  |||||||||||||||||||| | |||||||||||||||||||||||    
T  33372768 atctacaatgattataaatgcccggctgtcccacaccttcgtcttcgacgatctcttccgcgatttacttgagggttatgttggtcttcgtcattgttat 33372669  T
Q  119 ctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattg 210  Q
     ||||||||||||||| | |||||||||||||| |||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||    
T  33372668 ttgtagttgattgtatctgactaccataacccagtgacaacgacacgtcgtgttcccttgttggccatcccatatccagaaattgttcattg 33372577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 40822265 - 40822456
Alignment:
Q  19 atctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttat 118  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||||||||||||  |||||||||||||||||||| | |||||||||||||||||||||||    
T  40822265 atctacaatgattataaatgcccggctgtcccacaccttcgtcttcgacgatctcttccgcgatttacttgagggttatgttggtcttcgtcattgttat 40822364  T
Q  119 ctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattg 210  Q
     ||||||||||||||| | |||||||||||||| |||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||    
T  40822365 ttgtagttgattgtatctgactaccataacccagtgacaacgacacgtcgtgttcccttgttggccatcccatatccagaaattgttcattg 40822456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 8905832 - 8905679
Alignment:
Q  21 ctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttatct 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  8905832 ctacaattattataaatgccctgctgtcccacaccctcgtcttcgatgatgtcttccgcgatttacttgagggtcatgttggtcttcgtcattgttatct 8905733  T
Q  121 gtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtt 180  Q
    |||||||||||||||| ||||||||||||      |||||||||||||||||||||||||    
T  8905732 gtagttgattgtatttgactaccataacc------caacgacacatcgtgttcccttgtt 8905679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 33372391 - 33372567
Alignment:
Q  19 atctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttat 118  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||||||||||||  |||||||||||||||||||| | |||||||||||||||||| ||||    
T  33372391 atctacaatgattataaatgcccggctgtcccacaccttcgtcttcgacgatctcttccgcgatttacttgagggttatgttggtcttcgtcattattat 33372490  T
Q  119 ctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatcc 195  Q
     ||||||||||||||| | |||||||||||||| |||||||||||| ||||||||||||||| ||||||| ||||||    
T  33372491 ttgtagttgattgtatctgactaccataacccagtgacaacgacacgtcgtgttcccttgttggccatcccatatcc 33372567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 40822642 - 40822466
Alignment:
Q  19 atctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttat 118  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||||||||||||  |||||||||||||||||||| | |||||||||||||||||| ||||    
T  40822642 atctacaatgattataaatgcccggctgtcccacaccttcgtcttcgacgatctcttccgcgatttacttgagggttatgttggtcttcgtcattattat 40822543  T
Q  119 ctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatcc 195  Q
     ||||||||||||||| | |||||||||||||| |||||||||||| ||||||||||||||| ||||||| ||||||    
T  40822542 ttgtagttgattgtatctgactaccataacccagtgacaacgacacgtcgtgttcccttgttggccatcccatatcc 40822466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 44803082 - 44802821
Alignment:
Q  1 caaataaaata-ccataaaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgt 99  Q
    ||||||||||| ||||||||||||| ||||||| |||||||||  ||||||||||||||||||||||||||  |||   ||| |||||||||  ||||||    
T  44803082 caaataaaataaccataaaatctaccattattacaaatgccctcatgtcccacaccctcgtcttcgacgatttctttgacgaattacttgagcgtcatgt 44802983  T
Q  100 tggtcttcgtcattgttatctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaa 199  Q
    |||  ||| || ||||||||||||||||||||| | ||||||||||||||||| | ||||||||||||||||| ||||||| | ||| | ||||||||||    
T  44802982 tggatttcatcgttgttatctgtagttgattgtgtctaactaccataacccaacgtcaacgacacatcgtgtttccttgttggtcattccatatccagaa 44802883  T
Q  200 attgttcattgttattgaacgaagccggagagaagtgagataataggtttgttggtgttggt 261  Q
    |||||||||||   || || | | ||| |||||| ||||||| ||||| |||||||||||||    
T  44802882 attgttcattggagttcaatgcatccgaagagaaatgagatagtaggtatgttggtgttggt 44802821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 6000223 - 6000484
Alignment:
Q  17 aaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgtt 116  Q
    |||| ||||||||||| ||||| ||| |||||||||||| |||||||||| |||  |||   |||||||||||||  |||||||||  ||||||||||||    
T  6000223 aaatatacaattattacaaatgtcctcctgtcccacaccttcgtcttcgatgatttctttgacgatttacttgagcgtcatgttgggtttcgtcattgtt 6000322  T
Q  117 atctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgttattg 216  Q
    |||||||||||||||| | | ||| ||||||||||| | |||| |||||||||||| ||||||| |||| || |||||||||||||||||||||   ||     
T  6000323 atctgtagttgattgtgtctgactgccataacccaacgtcaacaacacatcgtgtttccttgttggccaacccatatccagaaattgttcattggagttc 6000422  T
Q  217 aacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||| | | |||||||||||||||| | | |||||||||||   ||| ||||||||||||||||||    
T  6000423 aacgcatctggagagaagtgagatagt-gatttgttggtgt---tggctggttgtagttttggttg 6000484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 35013685 - 35013626
Alignment:
Q  22 tacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcga 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35013685 tacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgtcttccgcga 35013626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 282
Target Start/End: Original strand, 8906327 - 8906365
Alignment:
Q  244 aggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  8906327 aggtttgttggtgttggtgggtggttgtagttttggttg 8906365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 35012989 - 35013024
Alignment:
Q  1 caaataaaataccataaaatctacaattattataaa 36  Q
    ||||||||| ||||||||||||||||||||||||||    
T  35012989 caaataaaacaccataaaatctacaattattataaa 35013024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 33
Target Start/End: Original strand, 34506814 - 34506844
Alignment:
Q  3 aataaaataccataaaatctacaattattat 33  Q
    |||||||||||||||||||||||||||||||    
T  34506814 aataaaataccataaaatctacaattattat 34506844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 9982238 - 9982267
Alignment:
Q  2 aaataaaataccataaaatctacaattatt 31  Q
    ||||||||||||||||||||||||||||||    
T  9982238 aaataaaataccataaaatctacaattatt 9982267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 2 - 282
Target Start/End: Complemental strand, 8598171 - 8597891
Alignment:
Q  2 aaataaaataccataaaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttg 101  Q
    |||| ||||| ||||| ||||||||||||||||||||||| ||||||  ||||||||||||||||||||  |||||||||||||||||||| ||||||||    
T  8598171 aaattaaatatcataatatctacaattattataaatgcccggctgtcttacaccctcgtcttcgacgatttcttccgcgatttacttgagggtcatgttg 8598072  T
Q  102 gtcttcgtcattgttatctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaat 201  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8598071 gtcttcgtcattgttatctgtagttgattgtatttgactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaat 8597972  T
Q  202 tgttcattgttattgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8597971 tgttcattgtcgttgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 8597891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 31304350 - 31304070
Alignment:
Q  1 caaataaaataccataaaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgtt 100  Q
    |||||||||||||| || ||||| ||||||||||||||||| |||||||||||||| |||||||||||||  |||||||||||||||||||| |||||||    
T  31304350 caaataaaataccacaatatctataattattataaatgcccggctgtcccacaccc-cgtcttcgacgatttcttccgcgatttacttgagggtcatgtt 31304252  T
Q  101 ggtcttcgtcattgttatctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaa 200  Q
    ||||||||||||| |||| ||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||| |||    
T  31304251 ggtcttcgtcattattatttgtagttgattgtatctgactaccataacccagtgacaacgacacatcgtgttcccttgttggccatcccatatccataaa 31304152  T
Q  201 ttgttcattgttattgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||| | || ||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  31304151 ttgttcattggtgttcaacgaagtcggagagaagtgagataacaggtttgttggtgttggtgggtggttgtagttttggttg 31304070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 282
Target Start/End: Complemental strand, 17963220 - 17962960
Alignment:
Q  22 tacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttatctg 121  Q
    |||||||||||||||||||||  ||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17963220 tacaattattataaatgccctattgtcccataccctcgtcttcgacgatgtcttccgcgatttacttgagggtcatgttggtcttcgtcattgttatctg 17963121  T
Q  122 tagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgttattgaacga 221  Q
    ||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||   |  |||||    
T  17963120 tagttgattgtatttgactaccataacacaacgacaacgacacatcgtgttccgttgttggccatcccatatccagaaattgttcattggagtccaacga 17963021  T
Q  222 agccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||    
T  17963020 agccggagagaagtgagatagtaggtttgttggtgttggtgggtgattgtagttttggttg 17962960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 42614098 - 42613835
Alignment:
Q  19 atctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttat 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| |||||||    
T  42614098 atctacaattattataaatgcccggctgtcccacaccctcgtcttcgacgatttcttccgcgatttacttgagggtcatgttggtcttcgtcgttgttat 42613999  T
Q  119 ctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgttattgaa 218  Q
    ||| || ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| ||| |    || ||    
T  42613998 ctgcagctgattgtatttgactaccataacccaatgacaatgacacatcgtgttcccttgttggccatcccatatccagaaattgatcactagagttcaa 42613899  T
Q  219 cgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42613898 cgaagccggagaaaagtgagataataggtttgttggtgttggtgggtggttgtagttttggttg 42613835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 11957038 - 11957098
Alignment:
Q  1 caaataaaat-accataaaatctacaattattataaatgccctgctgtcccacaccctcgt 60  Q
    |||||||||| |||||||| | ||||||||||||||||| ||| |||||||||||||||||    
T  11957038 caaataaaattaccataaattttacaattattataaatgtcctcctgtcccacaccctcgt 11957098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 2 - 282
Target Start/End: Complemental strand, 22028587 - 22028307
Alignment:
Q  2 aaataaaataccataaaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttg 101  Q
    |||| ||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||||||||||||||| ||||||||    
T  22028587 aaattaaatatcataaaatctacaattattataaatgcccggctgtccgacaccctcgtcttcgacgatttcttccgcgatttacttgagggtcatgttg 22028488  T
Q  102 gtcttcgtcattgttatctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaat 201  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22028487 gtcttcgtcattgttatctgtagctgattgtatttgactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccataaat 22028388  T
Q  202 tgttcattgttattgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22028387 tgttcattgtcgttgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 22028307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 26338879 - 26338616
Alignment:
Q  19 atctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttat 118  Q
    ||||||||| ||||||||||||| |||| |||||||||||||||||||||||  |||||||||||||||||||| | |||||||||||||||||||||||    
T  26338879 atctacaatgattataaatgcccggctgacccacaccctcgtcttcgacgatctcttccgcgatttacttgagggttatgttggtcttcgtcattgttat 26338780  T
Q  119 ctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgttattgaa 218  Q
     ||||||||||| ||| | |||||||||||||| |||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||   || ||    
T  26338779 ttgtagttgattatatatgactaccataacccagtgacaacgacacatcgtgttcccttgttggtcatcccatatccagaaattgttcattggagttcaa 26338680  T
Q  219 cgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    ||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  26338679 cgaagtcggagagaagtgagataacaggtttgttggtgttggtgggtggttgtagttttggttg 26338616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 34677856 - 34677745
Alignment:
Q  1 caaataaaataccataaaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||    
T  34677856 caaataaaataccataaaatctacaattattataaatgccctgttgtcccacaccctcgtcttcgacgatgtcttccgcgatttacttgagggtcatctt 34677757  T
Q  101 ggtcttcgtcat 112  Q
    ||||||||||||    
T  34677756 ggtcttcgtcat 34677745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 24841555 - 24841660
Alignment:
Q  1 caaataaaataccataaaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||| |||||||||||||||||||| |||||||    
T  24841555 caaataaaataccataaaatctacaattattataaatgccctgctgccccacacccccgtcttcgac-atgtcttccgcgatttacttgagggtcatgtt 24841653  T
Q  101 ggtcttc 107  Q
    |||||||    
T  24841654 ggtcttc 24841660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 24841775 - 24841691
Alignment:
Q  1 caaataaaataccataaaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgattta 85  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||| ||||||    
T  24841775 caaataaaatacaataaaatctacaattattataaatgccctgctgtcccacactctcgtctgcgacgatgtcttccgagattta 24841691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 13047511 - 13047543
Alignment:
Q  1 caaataaaataccataaaatctacaattattat 33  Q
    |||||||||||||||||||||||||||||||||    
T  13047511 caaataaaataccataaaatctacaattattat 13047543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 26334503 - 26334531
Alignment:
Q  3 aataaaataccataaaatctacaattatt 31  Q
    |||||||||||||||||||||||||||||    
T  26334503 aataaaataccataaaatctacaattatt 26334531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 34677353 - 34677385
Alignment:
Q  1 caaataaaataccataaaatctacaattattat 33  Q
    |||||||||||| ||||||||||||||||||||    
T  34677353 caaataaaatacaataaaatctacaattattat 34677385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 30350115 - 30349834
Alignment:
Q  1 caaataaaataccataaaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgtt 100  Q
    ||||| ||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||  ||| |||||||||||||||| |||||||    
T  30350115 caaattaaatatcataatatctacaattattataaatgcccggccgtcccacaccctcgtcttcgacgatttctttcgcgatttacttgagggtcatgtt 30350016  T
Q  101 ggtcttcgtcattgttatctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaa 200  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30350015 ggtcttcgtcattgttatctgtagctgattgtatttgattaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaa 30349916  T
Q  201 ttgttcattgttattgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30349915 ttgttcattgtcgttgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 30349834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 282
Target Start/End: Original strand, 47477657 - 47477933
Alignment:
Q  6 aaaataccataaaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtct 105  Q
    |||| ||||||||||||||||||||||||||| ||||||||| || |||| ||||||| ||||||| |||||||||||||||||||| ||||||||||||    
T  47477657 aaaacaccataaaatctacaattattataaataccctgctgttccgcaccttcgtctttgacgatgtcttccgcgatttacttgagggtcatgttggtct 47477756  T
Q  106 tcgtcattgttatctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgtt 205  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  47477757 tcgtcattgttatctgtagttgattgtatttgactatcataacccaacgacaacgacacatcgtgttcccttgttggccatcccatatccagaaattgtt 47477856  T
Q  206 cattgttattgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||   |  ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  47477857 cattggagtccaacgaagccggagagaagtgagatagtaggtttgttggtgttggtgggtggttgtagttttggttg 47477933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 6406678 - 6406941
Alignment:
Q  19 atctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttat 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| |||||||    
T  6406678 atctacaattattataaatgcccggctgtcccacaccctcgtcttcgacgatttcttccgcgatttacttgagggtcatgttggtcttcgtcgttgttat 6406777  T
Q  119 ctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgttattgaa 218  Q
    ||| || ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| ||| |    || ||    
T  6406778 ctgcagctgattgtatttgactaccataacccaatgacaatgacacatcgtgttcccttgttggccatcccatatccagaaattgatcactagagttcaa 6406877  T
Q  219 cgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6406878 cgaagccggagaaaagtgagataataggtttgttggtgttggtgggtggttgtagttttggttg 6406941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 39639555 - 39639292
Alignment:
Q  19 atctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttat 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| |||||||    
T  39639555 atctacaattattataaatgcccggctgtcccacaccctcgtcttcgacgatttcttccgcgatttacttgagggtcatgttggtcttcgtcgttgttat 39639456  T
Q  119 ctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgttattgaa 218  Q
    ||| || ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| ||| |    || ||    
T  39639455 ctgcagctgattgtatttgactaccataacccaatgacaatgacacatcgtgttcccttgttggccatcccatatccagaaattgatcactagagttcaa 39639356  T
Q  219 cgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39639355 cgaagccggagaaaagtgagataataggtttgttggtgttggtgggtggttgtagttttggttg 39639292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 51747025 - 51746762
Alignment:
Q  19 atctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttat 118  Q
    ||||||||| |||||||||||||  |||||||||||||||||||||||||||  |||||||||||||||||||| | |||||||||||||||||| ||||    
T  51747025 atctacaatgattataaatgcccgactgtcccacaccctcgtcttcgacgatctcttccgcgatttacttgagggttatgttggtcttcgtcattattat 51746926  T
Q  119 ctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgttattgaa 218  Q
     ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| | || ||    
T  51746925 ttgtagttgattgtatctgactaccataacccaatgacaacgacacatcgtgttcccttgttggccatcccatatccaaaaattgttcattggtgttcaa 51746826  T
Q  219 cgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    ||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  51746825 cgaagtcggagagaagtgagataacaggtttgttggtgttggtgggtggttgtagttttggttg 51746762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 21 - 256
Target Start/End: Complemental strand, 2227870 - 2227635
Alignment:
Q  21 ctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttatct 120  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |    
T  2227870 ctacaattattataaatgccatgctgtcccacaccctcgtcttcgacgatgtcttccgcgatttacttgagggtcatgttggtcttcgtcattgttatat 2227771  T
Q  121 gtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgttattgaacg 220  Q
    |||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||   |  ||||    
T  2227770 gtagttgattgtatttgactaccataacacaacgacaacgacacatcgtgttcccttgttggccatcccatatctagaaattgttcattggagtccaacg 2227671  T
Q  221 aagccggagagaagtgagataataggtttgttggtg 256  Q
    ||||||||||||||||||||| ||||||||||||||    
T  2227670 aagccggagagaagtgagatagtaggtttgttggtg 2227635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 49276229 - 49276275
Alignment:
Q  80 gatttacttgaggatcatgttggtcttcgtcattgttatctgtagtt 126  Q
    |||||||||||||  ||||||||  ||||||||||||||||||||||    
T  49276229 gatttacttgagggacatgttgggtttcgtcattgttatctgtagtt 49276275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 49617476 - 49617506
Alignment:
Q  1 caaataaaataccataaaatctacaattatt 31  Q
    |||||||||||||||||||||||||||||||    
T  49617476 caaataaaataccataaaatctacaattatt 49617506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 49617637 - 49617607
Alignment:
Q  1 caaataaaataccataaaatctacaattatt 31  Q
    |||||||||||||||||||||||||||||||    
T  49617637 caaataaaataccataaaatctacaattatt 49617607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 31151624 - 31151588
Alignment:
Q  1 caaataaaat-accataaaatctacaattattataaa 36  Q
    |||||||||| ||||||||||||||||||||||||||    
T  31151624 caaataaaattaccataaaatctacaattattataaa 31151588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 35960511 - 35960483
Alignment:
Q  3 aataaaataccataaaatctacaattatt 31  Q
    |||||||||||||||||||||||||||||    
T  35960511 aataaaataccataaaatctacaattatt 35960483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 19685015 - 19684752
Alignment:
Q  19 atctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttat 118  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||    
T  19685015 atctacaattattataaatgcccggctgtcccacaccatcgtcttcgacgatttcttccgcgatttacttgagggtcatgttggtcttcgtcattgttat 19684916  T
Q  119 ctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgttattgaa 218  Q
    |||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  19684915 ctgtagctgattgtatttgattaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgtcgttgaa 19684816  T
Q  219 cgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19684815 cgaagccgaagagaagtgagataataggtttgttggtgttggtggatggttgttgttttggttg 19684752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 20091095 - 20090832
Alignment:
Q  19 atctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttat 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| |||||||    
T  20091095 atctacaattattataaatgcccggctgtcccacaccctcgtcttcgacgatttcttccgcgatttacttgagggtcatgttggtcttcgtcgttgttat 20090996  T
Q  119 ctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgttattgaa 218  Q
    ||| || ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| ||| |    || ||    
T  20090995 ctgcagctgattgtatttgactaccataacccaatgacaatgacacatcgtgttcccttgttggccatcccatatccagaaattgatcactagagttcaa 20090896  T
Q  219 cgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20090895 cgaagccggagaaaagtgagataataggtttgttggtgttggtgggtggttgtagttttggttg 20090832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 30820661 - 30820924
Alignment:
Q  19 atctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttat 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| |||||||    
T  30820661 atctacaattattataaatgcccggctgtcccacaccctcgtcttcgacgatttcttccgcgatttacttgagggtcatgttggtcttcgtcgttgttat 30820760  T
Q  119 ctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgttattgaa 218  Q
    ||| || ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| ||| |    || ||    
T  30820761 ctgcagctgattgtatttgactaccataacccaatgacaatgacacatcgtgttcccttgttggccatcccatatccagaaattgatcagtagagttcaa 30820860  T
Q  219 cgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30820861 cgaagccggagaaaagtgagataataggtttgttggtgttggtgggtggttgtagttttggttg 30820924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 766570 - 766307
Alignment:
Q  19 atctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttat 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||| ||| ||||||||||||||||| |||||||    
T  766570 atctacaattattataaatgcccggctgtcccacaccctcgtcttcgacgatttcttccgcgatttacttaagggtcatgttggtcttcgtcgttgttat 766471  T
Q  119 ctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgttattgaa 218  Q
    ||| || ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| ||| |    || ||    
T  766470 ctgcagctgattgtatttgactaccataacccaatgacaatgacacatcgtgttcccttgttggccatcccatatccagaaattgatcactagagttcaa 766371  T
Q  219 cgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  766370 cgaagccggagaaaagtgagataataggtttgttggtgttggtgggtggttgtagttttggttg 766307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 19426248 - 19425985
Alignment:
Q  19 atctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttat 118  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| |||||||    
T  19426248 atctacaattattataaatgcccggctatcccacaccctcgtcttcgacgatttcttccgcgatttacttgagggtcatgttggtcttcgtcgttgttat 19426149  T
Q  119 ctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgttattgaa 218  Q
    ||| || ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| ||| |    || ||    
T  19426148 ctgcagctgattgtatttgactaccataacccaatgacaatgacacatcgtgttcccttgttggccatcccatatccagaaattgatcactagagttcaa 19426049  T
Q  219 cgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19426048 cgaagccggagaaaagtgagataataggtttgttggtgttggtgggtggttgtagttttggttg 19425985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 1378444 - 1378706
Alignment:
Q  19 atctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttat 118  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| |||||||    
T  1378444 atctacaattattataaatgtccggctgtcccacaccctcgtcttcgacgatttcttccgcgatttacttgagggtcatgttggtcttcgtcgttgttat 1378543  T
Q  119 ctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgttattgaa 218  Q
    ||| || ||||||||||| |||||||||| |||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| ||| |    || ||    
T  1378544 ctgcagctgattgtatttgactaccataa-ccaatgacaatgacacatcgtgttcccttgttggccatcccatatccagaaattgatcactagagttcaa 1378642  T
Q  219 cgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1378643 cgaagccggagaaaagtgagataataggtttgttggtgttggtgggtggttgtagttttggttg 1378706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 34003302 - 34003460
Alignment:
Q  21 ctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttatct 120  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  34003302 ctacaattattataaatgccctgctgttcgacaccctcgtcttcgacgatgtcttccgcgatttacttgagggtcatgttggtcttcgtcattgttatct 34003401  T
Q  121 gtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgt 179  Q
    |||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||    
T  34003402 gtagttgattgtatttgactaccataactcaacgacaacgacacatcgtgttcccttgt 34003460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 17 - 282
Target Start/End: Complemental strand, 30666973 - 30666711
Alignment:
Q  17 aaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgtt 116  Q
    |||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||  |||   |||||||||||||  |||||||||  ||||||||| ||    
T  30666973 aaatatacaattattacaaatgccctcctgtcccacaccctcgtctacgacgatttctttgacgatttacttgagcgtcatgttgggtttcgtcattatt 30666874  T
Q  117 atctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaattgttcattgttattg 216  Q
    ||||| |||||||||| | | ||| ||||||||||| ||||||||||||||||||||||||||| |||| || |||||||||||||||||||||   ||     
T  30666873 atctgcagttgattgtgtctgactgccataacccaacgacaacgacacatcgtgttcccttgttggccaacccatatccagaaattgttcattggagttc 30666774  T
Q  217 aacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    | || | |||||||||||||||||| |||||||||||||||||||   ||||||||||||||||||    
T  30666773 atcgcatccggagagaagtgagatagtaggtttgttggtgttggt---tggttgtagttttggttg 30666711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 21 - 167
Target Start/End: Original strand, 37987840 - 37987979
Alignment:
Q  21 ctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgttggtcttcgtcattgttatct 120  Q
    |||||||||||||||||||| || |||||||||| |||||||||||||||| |||||||||||||||||||| |       ||||||||||||||||| |    
T  37987840 ctacaattattataaatgccatgttgtcccacactctcgtcttcgacgatgtcttccgcgatttacttgagggt-------gtcttcgtcattgttatat 37987932  T
Q  121 gtagttgattgtatttaactaccataacccaatgacaacgacacatc 167  Q
    |||||||||||||||| |||||||||| | || || |||||||||||    
T  37987933 gtagttgattgtatttgactaccataatctaacgaaaacgacacatc 37987979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 38842242 - 38842119
Alignment:
Q  86 cttgaggatcatgttggtcttcgtcattgttatctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgcca 185  Q
    ||||||| |||||||||||||| ||||   ||| |||||||  ||||||||  |||| | | ||||| | ||| |||||||||||||| |||||  ||||    
T  38842242 cttgagggtcatgttggtcttcatcatcaatatttgtagtttgttgtatttgcctactaga-cccaacgtcaatgacacatcgtgttctcttgtaggcca 38842144  T
Q  186 tccaatatccagaaattgttcattg 210  Q
    ||| | ||||| |||||| ||||||    
T  38842143 tcccaaatccataaattgctcattg 38842119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 6599 - 6319
Alignment:
Q  1 caaataaaataccataaaatctacaattattataaatgccctgctgtcccacaccctcgtcttcgacgatgacttccgcgatttacttgaggatcatgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||  ||||||    
T  6599 caaataaaataccataaaatctacaattattataaatgccctgctgtcccacaccatcgtcttcgacgatatcttccgcgatttacttgagggacatgtt 6500  T
Q  101 ggtcttcgtcattgttatctgtagttgattgtatttaactaccataacccaatgacaacgacacatcgtgttcccttgtttgccatccaatatccagaaa 200  Q
    |||||||||||||||||||||||||||| ||||| | |||| |||||||||| | ||||||||||||||||||||||||| ||||||| |||||||||||    
T  6499 ggtcttcgtcattgttatctgtagttgactgtatctgactatcataacccaacgtcaacgacacatcgtgttcccttgttggccatcccatatccagaaa 6400  T
Q  201 ttgttcattgttattgaacgaagccggagagaagtgagataataggtttgttggtgttggtggatggttgtagttttggttg 282  Q
    ||||||||||  | | ||  ||||||||||||||||||||| |||||||||||||||| |||| | |||||||| |||||||    
T  6399 ttgttcattg-gagtcaattaagccggagagaagtgagatagtaggtttgttggtgtttgtgggtagttgtagtgttggttg 6319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2034 - 2066
Alignment:
Q  1 caaataaaataccataaaatctacaattattat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  2034 caaataaaataccataaaacctacaattattat 2066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 8398 - 8368
Alignment:
Q  1 caaataaaataccataaaatctacaattatt 31  Q
    |||||||||||||||||||||||||||||||    
T  8398 caaataaaataccataaaatctacaattatt 8368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 20361 - 20391
Alignment:
Q  1 caaataaaataccataaaatctacaattatt 31  Q
    |||||||||||||||||||||||||||||||    
T  20361 caaataaaataccataaaatctacaattatt 20391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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