View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8923_low_27 (Length: 295)
Name: NF8923_low_27
Description: NF8923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8923_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 42 - 286
Target Start/End: Original strand, 12907935 - 12908179
Alignment:
| Q |
42 |
tatccacctcattaatcattggcaggaattcagcagcaggttggaataaattaaccttcttgccctgtaattttaaggatcataagagagacagcaattt |
141 |
Q |
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| T |
12907935 |
tatccacctcattaatcattggcaggaattcagcagcaggttggaataaattaaccttcttgccctgtaattttaaggatcataagagagacagcaattt |
12908034 |
T |
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| Q |
142 |
attaagatactcgaagggatattcataataggatgagaggtagaaactttgaccacagtacctgcttgtctgtagacttaacgatgcaattagggtggtt |
241 |
Q |
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| T |
12908035 |
attaagatactcgaagggatattcataataggatgagaggtagaaactttgaccacagtacctgcttgtctgtagacttaacgatgcaattagggtggtt |
12908134 |
T |
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| Q |
242 |
aagtgacacagattgagattgtctaacagggccaatgatgtccat |
286 |
Q |
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| T |
12908135 |
atgtgacacagattgagattgtctaacagggccaatgatgtccat |
12908179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 13312241 - 13311964
Alignment:
| Q |
1 |
acaataaagaaagaaaattgaaaaacgattaataatagtagtatccacctcattaatcattggcaggaattcagcagcaggttggaataaattaaccttc |
100 |
Q |
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| T |
13312241 |
acaataaagaaagaaaattgaaaaatgattaataatagtagtatccacctcattaatcattggcaggaattcagcagcaggttggaataaattaaccttc |
13312142 |
T |
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| Q |
101 |
ttgccctgtaattttaaggatcataagagagacagcaatttattaagatactcgaagggatattcataataggatgagaggtagaaactttgaccacagt |
200 |
Q |
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| T |
13312141 |
---ccttgtaatt----ggatcataagagagatatcaatttattaagattctcgaagagatattcataattggaaga-atgtagacacattgaccacagt |
13312050 |
T |
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| Q |
201 |
acctgcttgtctgtagacttaacgatgcaattagggtggttaagtgacacagattgagattgtctaacagggccaatgatgtccat |
286 |
Q |
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| T |
13312049 |
acctgcttgtctgcggacttaatgatgcaattagggtggttatgtgatatagataaagattgtctaacagggccaatgatgtccat |
13311964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 1566278 - 1566209
Alignment:
| Q |
47 |
acctcattaatcattggcaggaattcagcagcaggttggaataaattaaccttcttgccctgtaatttta |
116 |
Q |
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| T |
1566278 |
acctcatcgatcataggcaggaattcagcagcaggttggaataaattaacttccttaccctgtaatttta |
1566209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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