View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8923_low_28 (Length: 266)

Name: NF8923_low_28
Description: NF8923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8923_low_28
NF8923_low_28
[»] chr8 (5 HSPs)
chr8 (16-256)||(2925406-2925645)
chr8 (60-232)||(3008049-3008221)
chr8 (85-231)||(2935309-2935455)
chr8 (139-235)||(2953586-2953685)
chr8 (83-196)||(37800092-37800205)
[»] chr2 (1 HSPs)
chr2 (84-238)||(28029338-28029492)
[»] chr3 (1 HSPs)
chr3 (86-235)||(1502017-1502166)
[»] chr5 (2 HSPs)
chr5 (111-168)||(8242146-8242203)
chr5 (111-169)||(36519920-36519978)
[»] chr6 (2 HSPs)
chr6 (111-167)||(20387253-20387309)
chr6 (126-223)||(4911583-4911680)
[»] chr7 (1 HSPs)
chr7 (113-171)||(20171414-20171472)


Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 2925406 - 2925645
Alignment:
Q  16 caacattatcattcatattcatgcatgattacactataagaaataaaaatatgaaaaattaaagaatgtgtacttgaatgagttccatgaggaagtgaac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2925406 caacattatcattcatattcatgcatgattacactataagaaataaaaatatgaaaaattaaagaatgtgtacttgaatgagttccatgaggaagtgaac 2925505  T
Q  116 atctttggcgtaaagttccgcaaagagatttttgacatcatgatgaagatcttcggtcaatggattaggtttcccaccaatggaaaacttttttcttcgt 215  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  2925506 atctttggcgtaaagttccgcaaagagatttttgacagcatgatgaagatcttcagtcaatggattaggtttcccaccaatgg-aaacttttttcttcgt 2925604  T
Q  216 atctcttctatgtgttcctttggcgttgccgttattctctg 256  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2925605 atctcttctatgtgttcctttggcgttgccgttattctctg 2925645  T

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Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 60 - 232
Target Start/End: Complemental strand, 3008221 - 3008049
Alignment:
Q  60 aaaaatatgaaaaattaaagaatgtgtacttgaatgagttccatgaggaagtgaacatctttggcgtaaagttccgcaaagagatttttgacatcatgat 159  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| || ||| ||||||| |||||  ||||||    
T  3008221 aaaaagatgaaaagttaaagaatgtgtacttgaatgagttccatgagaaaatgaacatctttggcgtaaagctcggcagagagattcttgactgcatgat 3008122  T
Q  160 gaagatcttcggtcaatggattaggtttcccaccaatggaaaacttttttcttcgtatctcttctatgtgttc 232  Q
    | ||||| |  |||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||    
T  3008121 ggagatcataagtcaatggattaggtttcccaccaatagaaaacttttctcttcgtatctcttcaatgtgttc 3008049  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 231
Target Start/End: Original strand, 2935309 - 2935455
Alignment:
Q  85 gtacttgaatgagttccatgaggaagtgaacatctttggcgtaaagttccgcaaagagatttttgacatcatgatgaagatcttcggtcaatggattagg 184  Q
    |||| |||||||| ||||| ||||| ||||||||| |||  || |||||  |  ||||||| |||||| | || ||||| || || ||||| || || ||    
T  2935309 gtacctgaatgagctccattaggaaatgaacatctctggtatatagttcatctgagagattcttgacagcttggtgaaggtcctcagtcaaagggtttgg 2935408  T
Q  185 tttcccaccaatggaaaacttttttcttcgtatctcttctatgtgtt 231  Q
     || ||||||||||| |||||||| |||||||||||||| |||||||    
T  2935409 attgccaccaatggagaactttttccttcgtatctcttcaatgtgtt 2935455  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 2953586 - 2953685
Alignment:
Q  139 agagatttttgacatcatgatgaagatcttcggtcaatggattag---gtttcccaccaatggaaaacttttttcttcgtatctcttctatgtgttcctt 235  Q
    ||||||| |||||| | ||||||||||||||  |||| ||||| |   ||||| ||||||| || ||||||| ||||||||||||||| |||||||||||    
T  2953586 agagattcttgacagcttgatgaagatcttcaatcaaaggatttgctcgtttctcaccaatagagaacttttctcttcgtatctcttcaatgtgttcctt 2953685  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 196
Target Start/End: Original strand, 37800092 - 37800205
Alignment:
Q  83 gtgtacttgaatgagttccatgaggaagtgaacatctttggcgtaaagttccgcaaagagatttttgacatcatgatgaagatcttcggtcaatggatta 182  Q
    ||||||||| ||||| ||||| ||||| || ||||| || || ||||| || ||| ||||||| || ||| | ||||| ||||| || ||||| ||||||    
T  37800092 gtgtacttgtatgagctccattaggaaatggacatcctttgcataaagctcagcagagagattcttaacagcgtgatgtagatcctcagtcaaaggatta 37800191  T
Q  183 ggtttcccaccaat 196  Q
    || |||||||||||    
T  37800192 ggattcccaccaat 37800205  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 238
Target Start/End: Original strand, 28029338 - 28029492
Alignment:
Q  84 tgtacttgaatgagttccatgaggaagtgaacatctttggcgtaaagttccgcaaagagatttttgacatcatgatgaagatcttcggtcaatggattag 183  Q
    ||||||||||| |||||||| ||||| ||||||||||| || ||||| || ||  ||||||| || ||  ||||||||||||| || ||||| |||||||    
T  28029338 tgtacttgaatcagttccatcaggaaatgaacatcttttgcataaagctcggcggagagattcttaacggcatgatgaagatcctcagtcaaaggattag 28029437  T
Q  184 gtttcccaccaatggaaaacttttttcttcgtatctcttctatgtgttcctttgg 238  Q
    | || |||||||| || |||||| | |||||||||||||| | |||||| |||||    
T  28029438 gatttccaccaatagagaactttgtccttcgtatctcttcaacgtgttcttttgg 28029492  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 1502166 - 1502017
Alignment:
Q  86 tacttgaatgagttccatgaggaagtgaacatctttggcgtaaagttccgcaaagagatttttgacatcatgatgaagatcttcggtcaatggattaggt 185  Q
    ||||||||| || ||||| || || ||||||||||| || |||||||| ||  ||||||| |||||| ||| ||||||||| |  |||||  ||||||||    
T  1502166 tacttgaataagctccataagaaaatgaacatcttttgcataaagttcagctgagagattcttgacagcattatgaagatcctgagtcaaaagattaggt 1502067  T
Q  186 ttcccaccaatggaaaacttttttcttcgtatctcttctatgtgttcctt 235  Q
    | ||| ||||| || |||||| | |||||||| ||||  |||||||||||    
T  1502066 tcccctccaatagagaactttgtccttcgtatatcttgaatgtgttcctt 1502017  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 8242203 - 8242146
Alignment:
Q  111 tgaacatctttggcgtaaagttccgcaaagagatttttgacatcatgatgaagatctt 168  Q
    |||||||||||||||||||||||  || |||||| ||||||| |||||||||||||||    
T  8242203 tgaacatctttggcgtaaagttcaacagagagatatttgacaacatgatgaagatctt 8242146  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 36519978 - 36519920
Alignment:
Q  111 tgaacatctttggcgtaaagttccgcaaagagatttttgacatcatgatgaagatcttc 169  Q
    |||||||||||||||||||||||  || | | |||||||||  ||||||||||||||||    
T  36519978 tgaacatctttggcgtaaagttcaacagataaatttttgactgcatgatgaagatcttc 36519920  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 20387309 - 20387253
Alignment:
Q  111 tgaacatctttggcgtaaagttccgcaaagagatttttgacatcatgatgaagatct 167  Q
    |||||||||||   |||||||||  ||||||||||||||||| ||||||||||||||    
T  20387309 tgaacatctttaatgtaaagttcaacaaagagatttttgacagcatgatgaagatct 20387253  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 223
Target Start/End: Complemental strand, 4911680 - 4911583
Alignment:
Q  126 taaagttccgcaaagagatttttgacatcatgatgaagatcttcggtcaatggattaggtttcccaccaatggaaaacttttttcttcgtatctcttc 223  Q
    |||||||| ||| ||||||| || ||| | ||||||||||||||  |||| || || |||||||| ||||| || || ||| | ||||||||||||||    
T  4911680 taaagttcagcagagagattcttaacagcttgatgaagatcttcaatcaaagggtttggtttcccgccaatagagaattttctccttcgtatctcttc 4911583  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 20171414 - 20171472
Alignment:
Q  113 aacatctttggcgtaaagttccgcaaagagatttttgacatcatgatgaagatcttcgg 171  Q
    |||||||||  |||| ||||| ||| |||| ||||||||| ||||||||||||||||||    
T  20171414 aacatctttatcgtagagttcagcagagagttttttgacagcatgatgaagatcttcgg 20171472  T

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