View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8923_low_32 (Length: 260)

Name: NF8923_low_32
Description: NF8923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8923_low_32
NF8923_low_32
[»] chr7 (5 HSPs)
chr7 (1-185)||(41866131-41866315)
chr7 (1-55)||(28261753-28261807)
chr7 (1-54)||(48918555-48918608)
chr7 (211-244)||(41866100-41866133)
chr7 (1-47)||(31656835-31656881)
[»] chr8 (7 HSPs)
chr8 (1-59)||(18668976-18669034)
chr8 (1-57)||(13117858-13117914)
chr8 (1-57)||(13135594-13135650)
chr8 (5-56)||(13009787-13009838)
chr8 (1-55)||(13011028-13011082)
chr8 (1-54)||(9577708-9577761)
chr8 (1-59)||(26442004-26442062)
[»] chr5 (3 HSPs)
chr5 (1-54)||(15369496-15369549)
chr5 (1-59)||(16946297-16946355)
chr5 (1-55)||(19732067-19732121)
[»] scaffold0971 (1 HSPs)
scaffold0971 (1-63)||(1326-1389)
[»] chr6 (1 HSPs)
chr6 (1-56)||(29022883-29022938)
[»] chr4 (6 HSPs)
chr4 (1-55)||(23458688-23458742)
chr4 (1-54)||(42636413-42636466)
chr4 (1-54)||(56191433-56191486)
chr4 (1-54)||(56435077-56435130)
chr4 (1-47)||(20916804-20916850)
chr4 (1-46)||(31032768-31032813)
[»] chr2 (2 HSPs)
chr2 (1-55)||(2388828-2388882)
chr2 (1-47)||(35514125-35514171)
[»] scaffold0899 (1 HSPs)
scaffold0899 (1-54)||(2473-2526)
[»] chr1 (1 HSPs)
chr1 (1-54)||(45764995-45765048)
[»] chr3 (2 HSPs)
chr3 (1-47)||(26379277-26379323)
chr3 (1-47)||(29383701-29383747)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 41866315 - 41866131
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccatttttgtttattccttttgtgaaaataggaggaatctgggttggtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41866315 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccatttttgtttattccttttgtgaaaataggaggaatccgggttggtc 41866216  T
Q  101 actaaatgacatttttgcccttgtcttgtacagcctgattttaatttattccttttaattcaaaaacaaaaccattgattatctt 185  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41866215 actatatgacatttttgcccttgtcttgtacagcctgatttgaatttattccttttaattcaaaaacaaaaccattgattatctt 41866131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 28261807 - 28261753
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccat 55  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28261807 tatcacgtcagtctaacacactgaaggtccccagttctagcctgggcgaagccat 28261753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 48918608 - 48918555
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 54  Q
    ||||||||||||||||||||||||||||| || |||||| || |||||||||||    
T  48918608 tatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 48918555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 244
Target Start/End: Complemental strand, 41866133 - 41866100
Alignment:
Q  211 cttaatgagctgaagacaagtaaaccttgttgat 244  Q
    ||||||||||||||||||||||||||||||||||    
T  41866133 cttaatgagctgaagacaagtaaaccttgttgat 41866100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 31656881 - 31656835
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggc 47  Q
    |||||||| ||||| ||||||| |||||||||||||||| |||||||    
T  31656881 tatcacgttagtctcacacactaaaggtccccagttcgaacctgggc 31656835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 18669034 - 18668976
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccattttt 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18669034 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccattttt 18668976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 13117858 - 13117914
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccattt 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13117858 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccattt 13117914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 13135594 - 13135650
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccattt 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13135594 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccattt 13135650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 13009838 - 13009787
Alignment:
Q  5 acgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccatt 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13009838 acgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccatt 13009787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 13011082 - 13011028
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccat 55  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  13011082 tatcacgtcagtctaacacactgaaggtccccagttcaaacctgggcgaagccat 13011028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 9577708 - 9577761
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 54  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  9577708 tatcacgtcagtctaacacactgaaggtccccagttcaaacctgggcgaagcca 9577761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 26442062 - 26442004
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccattttt 59  Q
    ||||||||||||||||||||||||||||| || |||||| || ||||||||||||||||    
T  26442062 tatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagccattttt 26442004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 15369496 - 15369549
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15369496 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 15369549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 16946355 - 16946297
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccattttt 59  Q
    ||||||||||||||||||||||||||||| || ||||||| | ||||||||||| ||||    
T  16946355 tatcacgtcagtctaacacactgaaggtctccggttcgagtccgggcgaagccaatttt 16946297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19732121 - 19732067
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccat 55  Q
    ||||||||||||||||||||||||||||| || |||| || | |||||| |||||    
T  19732121 tatcacgtcagtctaacacactgaaggtctccggttcaagtccgggcgacgccat 19732067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0971 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0971
Description:

Target: scaffold0971; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 1389 - 1326
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccat-ttttgttt 63  Q
    ||||||||||||||||||||||||||||| || |||||| || |||||||||||| ||||||||    
T  1389 tatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagccatgttttgttt 1326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 29022883 - 29022938
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccatt 56  Q
    ||||||||||||||||||||||||||||| || |||||| || |||||||||||||    
T  29022883 tatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagccatt 29022938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 23458742 - 23458688
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccat 55  Q
    ||||||||||||||||||||||||||||| || |||||| || ||||||||||||    
T  23458742 tatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagccat 23458688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 42636413 - 42636466
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 54  Q
    ||||||||||||||||||||||||||||| || |||||| || |||||||||||    
T  42636413 tatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 42636466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 56191486 - 56191433
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 54  Q
    ||||||||||||||||||||||||||||| || |||||| || |||||||||||    
T  56191486 tatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 56191433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 56435077 - 56435130
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 54  Q
    ||||||||||||||||||||||||||||| || |||||| || |||||||||||    
T  56435077 tatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 56435130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 20916850 - 20916804
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggc 47  Q
    |||||||||||||| |||||||||||||| ||||||||| |||||||    
T  20916850 tatcacgtcagtcttacacactgaaggtctccagttcgatcctgggc 20916804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31032768 - 31032813
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctggg 46  Q
    |||||||||||||| |||||||||||||| ||||||||| ||||||    
T  31032768 tatcacgtcagtcttacacactgaaggtctccagttcgatcctggg 31032813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 2388828 - 2388882
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccat 55  Q
    ||||||||||||||||||||||||||||| || |||||| || ||||||||||||    
T  2388828 tatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagccat 2388882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 35514125 - 35514171
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggc 47  Q
    |||||||||||||| |||||||||||||| ||||||||| |||||||    
T  35514125 tatcacgtcagtcttacacactgaaggtctccagttcgatcctgggc 35514171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0899 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0899
Description:

Target: scaffold0899; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2473 - 2526
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 54  Q
    ||||||||||||||||||||||||||||| |||||| || || |||||||||||    
T  2473 tatcacgtcagtctaacacactgaaggtctccagtttgaaccagggcgaagcca 2526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 45765048 - 45764995
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 54  Q
    ||||||||||||||||||||||||||||| || |||||| || |||||||||||    
T  45765048 tatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 45764995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 26379323 - 26379277
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggc 47  Q
    |||||||||||||| |||||||||||||| ||||||||| |||||||    
T  26379323 tatcacgtcagtcttacacactgaaggtctccagttcgatcctgggc 26379277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 29383701 - 29383747
Alignment:
Q  1 tatcacgtcagtctaacacactgaaggtccccagttcgagcctgggc 47  Q
    |||||||||||||| |||||||||||||| ||||||||| |||||||    
T  29383701 tatcacgtcagtcttacacactgaaggtctccagttcgatcctgggc 29383747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University