View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8923_low_5 (Length: 600)
Name: NF8923_low_5
Description: NF8923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8923_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 534; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 11 - 568
Target Start/End: Complemental strand, 1483143 - 1482586
Alignment:
| Q |
11 |
atggacatcatgcctagcaactcccagaaacccctaacccttaaaacctacacactaatttggttcaatgcacattttacccagcaactcccaaaaacca |
110 |
Q |
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| T |
1483143 |
atggacatcatgcctagcaactcccagaaacccctaatccttaaatcctacacactaatttggttcaatgcacattttacccagcaactccctaaaacca |
1483044 |
T |
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| Q |
111 |
ttagctgaccatgcatacacctacactttctttccacgcttcctctcaaataaaaattatcaagtaatatagaagaatatattatatcaaagaaagagtc |
210 |
Q |
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| T |
1483043 |
ttagctgaccatgcatacacctacactttctttccacgcttcctctcaaataaaaattatcaagtaatatagaagaatatattatatcaaacaaagagtc |
1482944 |
T |
|
| Q |
211 |
atggtgaattccaaacaatttgattaagagaaaagaaacaggtgtcattcaattcaaaattatagtcatacattgtaatatatacaatggattataccaa |
310 |
Q |
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| T |
1482943 |
atggtgaattccaaacaatttgattaagagaaaagaaacaggtgtcattcaattcaaaattatagtcatacattgtaatatatacaatggattataccaa |
1482844 |
T |
|
| Q |
311 |
aattgcaacaaaatcatcaaagaatggtgatgcaaggaaaaatctaaaatgtatacagctttaatcttcaagcagaagattaagcagattggaaaaatca |
410 |
Q |
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| T |
1482843 |
aattgcaacaaaatcatcaaagaatggtgatgcaaggaaaaatctaaaatgtatacagctttaatcttcaagcagaagattaagcagattggaaaaatca |
1482744 |
T |
|
| Q |
411 |
ccaagttctttgcttttggaaccctataaatcatcagaagatgattaagctcagcccaaatctccttttccttttgctctatgatatctccttcaactat |
510 |
Q |
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| T |
1482743 |
ccaagttctttgcttttggatccctataaatcatcagaagatgattaagctcagcccaaatctccttttccttttgctctatgatatctccttcaactat |
1482644 |
T |
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| Q |
511 |
cttcaatagtttttctgcacttcaaatcttcttcaattcacctcatggacattagggt |
568 |
Q |
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| T |
1482643 |
cttcaatagtttttctgcacttcaaatctttttcaattcacctcatggacattagggt |
1482586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 25 - 587
Target Start/End: Complemental strand, 36717882 - 36717295
Alignment:
| Q |
25 |
tagcaactcccagaaacccctaacccttaaaacctacacactaatttggttcaatgcacattttacccagcaactcccaaaaaccattagctgaccatgc |
124 |
Q |
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| T |
36717882 |
tagcaactcccagaaacccttaacc-ttaaatcctacacattggtttgattcaatacacattttgcccagcaactcccaaaaacccttacccaaccatgc |
36717784 |
T |
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| Q |
125 |
atacac--ctacactttctttccacgcttcctctca-------------------aataaaaattatcaagtaatatagaagaatatattatatcaaaga |
203 |
Q |
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| T |
36717783 |
atacacagctacactttccttccacgcttcctctcagaaagagaaaaaaaaaaaaaaaaaaaacaatcaagtaatagagaaccatatatcttatcaaaca |
36717684 |
T |
|
| Q |
204 |
aagagtcatggtgaattccaaacaatttgattaagagaaaagaaacaggtgtcattcaattcaaaattatagtcatacattgtaatatatacaatggatt |
303 |
Q |
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| T |
36717683 |
aagaatcatggtgaattccaaacaatttgattaagagaaaagaaataggtgtcattcgattcaaaactatagtcatacattgtaatatatacaatggatt |
36717584 |
T |
|
| Q |
304 |
ataccaaaattgcaacaaaatcatcaaagaatggtgatgcaaggaaaaatctaaaatgtatacagctttaatcttcaagcagaagattaagcagattgga |
403 |
Q |
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| T |
36717583 |
acaccaaaattgcaacaaaatcatcaaagaatgatgatgcaaggaaaaatctaaaatgtatacagctataatcttcaagtagaagattacacaaactgga |
36717484 |
T |
|
| Q |
404 |
aaaatcaccaagttctttgctt------ttggaaccctataaatcatcagaagatgattaagctcagcccaaatctccttttccttttgctctatgatat |
497 |
Q |
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| T |
36717483 |
tcaaacaccaagttctctgctttccttcttgaagccctataaatcatcagaagatgattaagctcagcccaaatctcctttcccatttgctctaagattt |
36717384 |
T |
|
| Q |
498 |
ctccttcaactatcttcaatagtttttctgcacttcaaatcttcttcaattcacctcatggacattagggtcgaaacccttttctgatgt |
587 |
Q |
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| T |
36717383 |
ctccttcaattctctttaat-tttttcctgcactttaaatcttcttcaattcacctcatggacatcaaggtcctaacccttttctgatgt |
36717295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 382
Target Start/End: Complemental strand, 1483329 - 1483267
Alignment:
| Q |
320 |
aaaatcatcaaagaatggtgatgcaaggaaaaatctaaaatgtatacagctttaatcttcaag |
382 |
Q |
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| T |
1483329 |
aaaatcatcatagaatgatggtgcaaggaaaaatttaaaatgtttacaactgtaatcttcaag |
1483267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 326
Target Start/End: Complemental strand, 36718065 - 36717995
Alignment:
| Q |
257 |
attcaattcaaaattatagtcatacatt-gtaatatatacaatggattataccaaaattgcaacaaaatca |
326 |
Q |
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|||| |||||||||| | || ||||||| |||||||| ||||||||||| ||| |||||||||||| |||| |
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| T |
36718065 |
attcgattcaaaattgttgtgatacatttgtaatatagacaatggattacacctaaattgcaacaagatca |
36717995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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