View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8923_low_8 (Length: 477)

Name: NF8923_low_8
Description: NF8923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8923_low_8
NF8923_low_8
[»] chr1 (3 HSPs)
chr1 (15-226)||(52948409-52948620)
chr1 (122-200)||(31811105-31811183)
chr1 (297-361)||(31813471-31813535)
[»] scaffold0140 (1 HSPs)
scaffold0140 (139-226)||(40942-41029)
[»] scaffold0129 (2 HSPs)
scaffold0129 (122-200)||(66-144)
scaffold0129 (297-361)||(1922-1986)
[»] chr2 (2 HSPs)
chr2 (122-200)||(22055417-22055495)
chr2 (297-361)||(22057803-22057867)
[»] chr6 (2 HSPs)
chr6 (290-361)||(19397002-19397073)
chr6 (122-174)||(19393858-19393910)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 5e-97; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 52948409 - 52948620
Alignment:
Q  15 gttggaggtcaagaaggtcatgtagttgaagaaggcacaatgaatgaaggtgattgtgtatgtgatgatgaagaaatgagcggagatggttctgatgact 114  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||| || ||||||||||||||||    
T  52948409 gttggaggtcaagaaggtcatgtagttgaataaggcacaatgaatgaagctgatggtgtatgtgatgatgaagaaatgagtggtgatggttctgatgact 52948508  T
Q  115 atatgggaagtagtgaagatgaagctgctggagtaagattggatgatagtgaggaggaaaaagctatgggcatggatgatgtgtttttagttgaagatga 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||    
T  52948509 atatgggaagtagtgaagatgaagctgctggagtaagattggatgatagtgaagaggaaaaagctatgggcatgaatgatgggtttttagttgaagatga 52948608  T
Q  215 tgagactcctcc 226  Q
    ||||||||||||    
T  52948609 tgagactcctcc 52948620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 31811105 - 31811183
Alignment:
Q  122 aagtagtgaagatgaagctgctggagtaagattggatgatagtgaggaggaaaaagctatgggcatggatgatgtgttt 200  Q
    |||||||||||||||||||||||| || ||| | ||||| ||||||||||||| |||  ||||  ||||||||| ||||    
T  31811105 aagtagtgaagatgaagctgctggtgttagacttgatgacagtgaggaggaaagagcattgggtttggatgatgggttt 31811183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 361
Target Start/End: Original strand, 31813471 - 31813535
Alignment:
Q  297 gaatttgaggcacttgctgcagaccttgcatctgcatttgaggctactcaaacccaaccaaatgt 361  Q
    |||||||| || ||||||||||| |||||||| || ||||| ||||||||| | |||||||||||    
T  31813471 gaatttgaagcccttgctgcagatcttgcatcagcttttgaagctactcaatctcaaccaaatgt 31813535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 41029 - 40942
Alignment:
Q  139 ctgctggagtaagattggatgatagtgaggaggaaaaagctatgggcatggatgatgtgtttttagttgaagatgatgagactcctcc 226  Q
    |||||||||||||||||||||||||||||||||||| |||| | ||||||||||||| ||||||||||||||||||||||||||||||    
T  41029 ctgctggagtaagattggatgatagtgaggaggaaagagctctaggcatggatgatgggtttttagttgaagatgatgagactcctcc 40942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 66 - 144
Alignment:
Q  122 aagtagtgaagatgaagctgctggagtaagattggatgatagtgaggaggaaaaagctatgggcatggatgatgtgttt 200  Q
    |||||||||||||||||||||||| || ||| | ||||| ||||||||||||| |||  ||||  ||||||||| ||||    
T  66 aagtagtgaagatgaagctgctggtgttagacttgatgacagtgaggaggaaagagcattgggtttggatgatgggttt 144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 361
Target Start/End: Original strand, 1922 - 1986
Alignment:
Q  297 gaatttgaggcacttgctgcagaccttgcatctgcatttgaggctactcaaacccaaccaaatgt 361  Q
    |||||||| || ||||||||||| |||||||| || ||||| ||||||||| | |||||||||||    
T  1922 gaatttgaagcccttgctgcagatcttgcatcagcttttgaagctactcaatctcaaccaaatgt 1986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 22055417 - 22055495
Alignment:
Q  122 aagtagtgaagatgaagctgctggagtaagattggatgatagtgaggaggaaaaagctatgggcatggatgatgtgttt 200  Q
    |||||||||||||||||||||||| || ||| | ||||| ||||||||||||| |||  ||||  ||||||||| ||||    
T  22055417 aagtagtgaagatgaagctgctggtgttagacttgatgacagtgaggaggaaagagcattgggtttggatgatgggttt 22055495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 361
Target Start/End: Original strand, 22057803 - 22057867
Alignment:
Q  297 gaatttgaggcacttgctgcagaccttgcatctgcatttgaggctactcaaacccaaccaaatgt 361  Q
    |||||||| || ||||||||||| |||||||| || ||||| ||||||||| | |||||||||||    
T  22057803 gaatttgaagcccttgctgcagatcttgcatcagcttttgaagctactcaatctcaaccaaatgt 22057867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 361
Target Start/End: Original strand, 19397002 - 19397073
Alignment:
Q  290 agaccctgaatttgaggcacttgctgcagaccttgcatctgcatttgaggctactcaaacccaaccaaatgt 361  Q
    |||||| |||||||| || ||||||||||| |||||| | || ||||| ||||||||| | |||||||||||    
T  19397002 agacccagaatttgaagcccttgctgcagatcttgcagcagcttttgaagctactcaatctcaaccaaatgt 19397073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 19393858 - 19393910
Alignment:
Q  122 aagtagtgaagatgaagctgctggagtaagattggatgatagtgaggaggaaa 174  Q
    |||||||||||||||||||||||| || ||| | ||||| ||||| |||||||    
T  19393858 aagtagtgaagatgaagctgctggtgttagacttgatgacagtgatgaggaaa 19393910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University