View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8924_high_19 (Length: 308)
Name: NF8924_high_19
Description: NF8924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8924_high_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 43474918 - 43475197
Alignment:
| Q |
13 |
gcagagatataaaggaagccaagaaaccttgaaaaggttgaattagtagtcttaaatacaccaacactgtaaattgcttcgatttcaatatgttcaaact |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
43474918 |
gcagagatataaaggaagccaagaaaccttgaaaaggttgaattagtagtcttaaatacaccaacactgtgaattgcttcaatttcaatatgttcaaact |
43475017 |
T |
|
| Q |
113 |
tcaagatggtgtgtttgnnnnnnnngtaatgctcgcttcaggatgtatatatatgtatttattatcttacttttctatttttaagtgagtcattatgtac |
212 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43475018 |
tcaagatggtgtgtttgttttttttgtaatgctcgcttcaggatgtatatatatgtatatattatcttacttttctattttcaagtgagtcattatgtac |
43475117 |
T |
|
| Q |
213 |
cgtagctaacattttgatgcgatgaatgttaatttgaattgtgaaagttcagcaacttatgactttactgtgaaattatt |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43475118 |
ggtagctaacattttgatgcgatgaatgttaatttgaattgtgaaagttcagcaacttacgactttactgtgaaattatt |
43475197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 138 - 292
Target Start/End: Complemental strand, 43565253 - 43565097
Alignment:
| Q |
138 |
gtaatgctcgcttcaggatgtatatatatgtatttattat--cttacttttctatttttaagtgagtcattatgtaccgtagctaacattttgatgcgat |
235 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| |||||| ||||||||||| |||| ||||||||||||||||||| | |||||||||||||||| || |
|
|
| T |
43565253 |
gtaatgctggcttcaggatgtatatatttgtatatattatatcttacttttctgttttcaagtgagtcattatgtaccatggctaacattttgatgccat |
43565154 |
T |
|
| Q |
236 |
gaatgttaatttgaattgtgaaagttcagcaacttatgactttactgtgaaattatt |
292 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
43565153 |
gaatgttaatttgaattgtgaaagttcggcaacttatgactttactttgaaattatt |
43565097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 43565357 - 43565281
Alignment:
| Q |
13 |
gcagagatataaaggaagccaagaaaccttgaaaa-ggttgaattagtagtcttaaatacaccaacactgtaaattg |
88 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43565357 |
gcagagatataaaggaagccaagagtgatagaaaaaggttgaattagtagtcttaaatacaccaacactgtgaattg |
43565281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 43572318 - 43572271
Alignment:
| Q |
11 |
aagcagagatataaaggaagccaagaaaccttgaaaaggttgaattag |
58 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43572318 |
aagcagggatacaaaggaagccaagaaaccttgaagaggttgaattag |
43572271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University